Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 116 2e-21
seq45117 116 2e-21
seq36 84.2 1e-11
>seq48644
Length=2856
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||||| || || || ||| ||||| |||||||| |||| |
Sbjct 1834 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 1893
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || |||| || | ||||| ||||| || || | ||||||||| || | ||
Sbjct 1894 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1953
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| || ||| ||||| ||| ||| | ||||||| ||||| ||
Sbjct 1954 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCA-CATTGTCGATGGTGTCGGAAGATTCAAC 2012
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | || ||||| || || |||| ||||| ||||||||||||||
Sbjct 2013 CTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCAT 2060
>seq45117
Length=3449
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||||| || || || ||| ||||| |||||||| |||| |
Sbjct 2427 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 2486
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || |||| || | ||||| ||||| || || | ||||||||| || | ||
Sbjct 2487 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2546
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| || ||| ||||| ||| ||| | ||||||| ||||| ||
Sbjct 2547 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCA-CATTGTCGATGGTGTCGGAAGATTCAAC 2605
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | || ||||| || || |||| ||||| ||||||||||||||
Sbjct 2606 CTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCAT 2653
>seq36
Length=331580
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | || ||||| | || || || ||||| || ||||||||||| |
Sbjct 256990 CCACCTCTAAGCCGCAACACGAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCAGCA 256931
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || ||||||||||| || ||||| |||| | ||||||||| | ||
Sbjct 256930 AGGGTGCGGCCATCCTCCAATTGTTTACCAGCAAATATCAGCCTCTGCTGATCAGGAGGA 256871
Query 33643 ACACCTTCTTTGTC 33656
| |||||| |||||
Sbjct 256870 ATACCTTCCTTGTC 256857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 327151267428480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |