Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 345 1e-90
seq8546 232 2e-56
seq25216 187 7e-43
seq29420 168 2e-37
seq59 165 2e-36
seq8630 113 1e-20
seq4835 95.1 4e-15
>seq5412
Length=31808
Score = 345 bits (382), Expect = 1e-90
Identities = 467/646 (72%), Gaps = 10/646 (2%)
Strand=Plus/Minus
Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657
|| ||||| || |||||||| ||||| || || || |||||||| || || ||||| ||
Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177
Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717
| || |||||||| |||||||| || || || || ||| | ||| || |
Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117
Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777
|| || || | ||||| || ||||| ||||||||| || ||||||||||| | |||
Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057
Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATG 19837
|| || || || | | || | || || |||||| | |||| | | |||||||
Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997
Query 19838 GGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTAC 19897
|| || |||||||||||||| | || || || ||| | ||||||||| |||||| ||
Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937
Query 19898 TCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAG 19956
|| || || ||||| | || |||| || ||||| | ||||||| ||||| | || ||
Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTTAAGGAAG 14878
Query 19957 CTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCA 20016
||| || ||| ||||||| | || || || ||||| ||||||| |||| | ||||||||
Sbjct 14877 CTTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCA 14818
Query 20017 AGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGG 20076
|| || || ||||| || |||||||| || |||||| | || || |||||||||||||
Sbjct 14817 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGA 14758
Query 20077 TGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGA 20135
|| | |||||||| ||| ||||| | || || | | | ||| | | || |
Sbjct 14757 CGGCTACCTATTCAG------GCATGGTTCTTTGGTAACCT-CGAGTTTGATCAGGGAAA 14705
Query 20136 CTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATA 20195
| || ||| | ||| | || | ||||||| | |||| ||||| |||||||| ||||
Sbjct 14704 CCACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATA 14645
Query 20196 ACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATA 20241
| |||||||| ||||||||||| ||||| || || |||||||||||
Sbjct 14644 ATATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14599
Score = 93.3 bits (102), Expect = 1e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446
|||||||| ||| ||||||||||||| ||| | || || |||| || || | || ||
Sbjct 14564 GGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCACTAACCTTGGTATGGAAGTT 14505
Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487
||||||||||| ||||||| ||||||||| || ||||| ||
Sbjct 14504 ATGCATGAACGTAATGCTCCTAACTTCCCTCTCGACCTAGC 14464
>seq8546
Length=31398
Score = 232 bits (256), Expect = 2e-56
Identities = 320/443 (72%), Gaps = 10/443 (2%)
Strand=Plus/Minus
Query 20048 CACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCG 20107
|||||| | || || |||||||||||||| || || ||||||||| ||||| |||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 20108 CTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAG--AACTATGGT 20164
| || || || | | ||| | | || || || ||| | || || | || | |||
Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAA--TCCGCTAATGAAGGT 13088
Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224
|||| ||||| ||||| || || || | || || ||||| ||||||||||| |||||
Sbjct 13087 TACAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGC 13028
Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284
|| || ||||||||||| ||| ||||||| || | |||| |||| |||||| | | |
Sbjct 13027 CGATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTT 12968
Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344
|| ||||| || ||||| || ||||| || | || || || ||| ||||| ||||
Sbjct 12967 GCTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATC 12908
Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404
|| ||||| ||||| || ||||| || | | || | | |||||||| ||| |
Sbjct 12907 CTAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT----AT 12852
Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464
||||| || ||| | || || ||||| || || | || || ||||||||||| ||||||
Sbjct 12851 TGGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 12792
Query 20465 CATAACTTCCCACTTGACCTTGC 20487
|||||||||| || ||||| ||
Sbjct 12791 CATAACTTCCATCTAGACCTAGC 12769
>seq25216
Length=8180
Score = 187 bits (206), Expect = 7e-43
Identities = 187/240 (78%), Gaps = 2/240 (1%)
Strand=Plus/Minus
Query 19868 GGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTC 19927
|| ||| | ||||||||| | |||| || || ||||| ||||| || || |||| ||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGT- 7195
Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986
||||| | ||||||| ||||||| || ||||| || |||| ||||||| | || || ||
Sbjct 7194 TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTC 7135
Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046
||||| ||||||| |||| | |||||||| | || || ||||| || |||||||| ||
Sbjct 7134 TGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATT 7075
Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106
|||||| | || || | |||||||||||| || || ||||||||||| ||||| |||||
Sbjct 7074 TCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 7015
>seq29420
Length=7120
Score = 168 bits (186), Expect = 2e-37
Identities = 256/360 (71%), Gaps = 6/360 (2%)
Strand=Plus/Plus
Query 19619 GCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGA 19678
||||| || || || |||||||| || || ||||| || || || |||||| | |||
Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475
Query 19679 AACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCT 19736
||||| || || || || | | | |||||| | || ||| || || | ||||| |
Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGC--TGCTATAGGTTTGCACTTTT 3533
Query 19737 ACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAAC 19796
| ||||| ||||||||| || ||||||||||| | ||||| || || || | | |
Sbjct 3534 ATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGC 3593
Query 19797 TTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTA 19856
| || || |||||| | |||| | | ||||||||| || |||||||||||||
Sbjct 3594 TAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA 3653
Query 19857 GCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCG 19916
| | || || || ||| | ||||||||| |||||| || || | ||| ||||| || |
Sbjct 3654 GTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713
Query 19917 CCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCT 19975
| || | | ||||| | ||||||| ||||||| || ||||| || |||| |||||||
Sbjct 3714 CTACTACTAT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCT 3772
>seq59
Length=339703
Score = 165 bits (182), Expect = 2e-36
Identities = 194/260 (75%), Gaps = 2/260 (1%)
Strand=Plus/Plus
Query 19958 TTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAA 20017
|| || |||| ||||||| | || | || ||||| ||||||| |||| | ||||||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 20018 GCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGT 20077
|| || || ||||| || |||||||| || |||||| | | || ||||||||||||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 20078 GGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGAC 20136
|| || |||||||||| ||||| ||||| | || || | | | ||| | | || ||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCT-CGAGTTTGATTAGGGAAAC 52487
Query 20137 TACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAA 20196
|| ||| | ||| | || | ||||||| |||||| ||||| |||||||| |||||
Sbjct 52488 CACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAA 52547
Query 20197 CATCGTAGCCGCTCATGGTT 20216
|| ||||| |||||||||
Sbjct 52548 TATTGTAGCTACTCATGGTT 52567
>seq8630
Length=23577
Score = 113 bits (124), Expect = 1e-20
Identities = 105/132 (80%), Gaps = 1/132 (1%)
Strand=Plus/Plus
Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTA-GCCGCTCATGGTTACTT 20220
|||||||| ||||| ||||| || || || || || |||||| || ||||||||||| ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 20221 TGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCT 20280
||| || || ||||||||||| ||| |||||||||| |||||| |||| ||||| |
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616
Query 20281 TGCTGCCTGGCC 20292
|| || |||||
Sbjct 7617 AGCCGCTTGGCC 7628
>seq4835
Length=43218
Score = 95.1 bits (104), Expect = 4e-15
Identities = 102/135 (76%), Gaps = 4/135 (3%)
Strand=Plus/Plus
Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221
||||||| ||||| ||||| || || || || || |||||||| ||||||||||| |||
Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118
Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCT----CTACACTTCTT 20277
|| | || ||||||||||| ||| ||||||||| |||||| |||| |||||
Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178
Query 20278 CCTTGCTGCCTGGCC 20292
| || || |||||
Sbjct 9179 ATTAGCCGCTTGGCC 9193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148143788844852
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