Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq5412 345 1e-90 seq8546 232 2e-56 seq25216 187 7e-43 seq29420 168 2e-37 seq59 165 2e-36 seq8630 113 1e-20 seq4835 95.1 4e-15 >seq5412 Length=31808 Score = 345 bits (382), Expect = 1e-90 Identities = 467/646 (72%), Gaps = 10/646 (2%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| || |||||||| ||||| || || || |||||||| || || ||||| || Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717 | || |||||||| |||||||| || || || || ||| | ||| || | Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117 Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777 || || || | ||||| || ||||| ||||||||| || ||||||||||| | ||| Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057 Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATG 19837 || || || || | | || | || || |||||| | |||| | | ||||||| Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997 Query 19838 GGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTAC 19897 || || |||||||||||||| | || || || ||| | ||||||||| |||||| || Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937 Query 19898 TCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAG 19956 || || || ||||| | || |||| || ||||| | ||||||| ||||| | || || Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTTAAGGAAG 14878 Query 19957 CTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCA 20016 ||| || ||| ||||||| | || || || ||||| ||||||| |||| | |||||||| Sbjct 14877 CTTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCA 14818 Query 20017 AGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGG 20076 || || || ||||| || |||||||| || |||||| | || || ||||||||||||| Sbjct 14817 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGA 14758 Query 20077 TGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGA 20135 || | |||||||| ||| ||||| | || || | | | ||| | | || | Sbjct 14757 CGGCTACCTATTCAG------GCATGGTTCTTTGGTAACCT-CGAGTTTGATCAGGGAAA 14705 Query 20136 CTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATA 20195 | || ||| | ||| | || | ||||||| | |||| ||||| |||||||| |||| Sbjct 14704 CCACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATA 14645 Query 20196 ACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATA 20241 | |||||||| ||||||||||| ||||| || || ||||||||||| Sbjct 14644 ATATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 93.3 bits (102), Expect = 1e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446 |||||||| ||| ||||||||||||| ||| | || || |||| || || | || || Sbjct 14564 GGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCACTAACCTTGGTATGGAAGTT 14505 Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||||||||| ||||||| ||||||||| || ||||| || Sbjct 14504 ATGCATGAACGTAATGCTCCTAACTTCCCTCTCGACCTAGC 14464 >seq8546 Length=31398 Score = 232 bits (256), Expect = 2e-56 Identities = 320/443 (72%), Gaps = 10/443 (2%) Strand=Plus/Minus Query 20048 CACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCG 20107 |||||| | || || |||||||||||||| || || ||||||||| ||||| ||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 20108 CTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAG--AACTATGGT 20164 | || || || | | ||| | | || || || ||| | || || | || | ||| Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAA--TCCGCTAATGAAGGT 13088 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| ||||| ||||| || || || | || || ||||| ||||||||||| ||||| Sbjct 13087 TACAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGC 13028 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || || ||||||||||| ||| ||||||| || | |||| |||| |||||| | | | Sbjct 13027 CGATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTT 12968 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || ||||| || ||||| || ||||| || | || || || ||| ||||| |||| Sbjct 12967 GCTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATC 12908 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || ||||| ||||| || ||||| || | | || | | |||||||| ||| | Sbjct 12907 CTAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT----AT 12852 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 ||||| || ||| | || || ||||| || || | || || ||||||||||| |||||| Sbjct 12851 TGGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 12792 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 |||||||||| || ||||| || Sbjct 12791 CATAACTTCCATCTAGACCTAGC 12769 >seq25216 Length=8180 Score = 187 bits (206), Expect = 7e-43 Identities = 187/240 (78%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 19868 GGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTC 19927 || ||| | ||||||||| | |||| || || ||||| ||||| || || |||| || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGT- 7195 Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | ||||||| ||||||| || ||||| || |||| ||||||| | || || || Sbjct 7194 TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTC 7135 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| ||||||| |||| | |||||||| | || || ||||| || |||||||| || Sbjct 7134 TGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATT 7075 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||| | || || | |||||||||||| || || ||||||||||| ||||| ||||| Sbjct 7074 TCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 7015 >seq29420 Length=7120 Score = 168 bits (186), Expect = 2e-37 Identities = 256/360 (71%), Gaps = 6/360 (2%) Strand=Plus/Plus Query 19619 GCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGA 19678 ||||| || || || |||||||| || || ||||| || || || |||||| | ||| Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 19679 AACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCT 19736 ||||| || || || || | | | |||||| | || ||| || || | ||||| | Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGC--TGCTATAGGTTTGCACTTTT 3533 Query 19737 ACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAAC 19796 | ||||| ||||||||| || ||||||||||| | ||||| || || || | | | Sbjct 3534 ATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGC 3593 Query 19797 TTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTA 19856 | || || |||||| | |||| | | ||||||||| || ||||||||||||| Sbjct 3594 TAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA 3653 Query 19857 GCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCG 19916 | | || || || ||| | ||||||||| |||||| || || | ||| ||||| || | Sbjct 3654 GTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713 Query 19917 CCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCT 19975 | || | | ||||| | ||||||| ||||||| || ||||| || |||| ||||||| Sbjct 3714 CTACTACTAT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCT 3772 >seq59 Length=339703 Score = 165 bits (182), Expect = 2e-36 Identities = 194/260 (75%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 19958 TTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAA 20017 || || |||| ||||||| | || | || ||||| ||||||| |||| | |||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 20018 GCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGT 20077 || || || ||||| || |||||||| || |||||| | | || |||||||||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 20078 GGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGAC 20136 || || |||||||||| ||||| ||||| | || || | | | ||| | | || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCT-CGAGTTTGATTAGGGAAAC 52487 Query 20137 TACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAA 20196 || ||| | ||| | || | ||||||| |||||| ||||| |||||||| ||||| Sbjct 52488 CACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAA 52547 Query 20197 CATCGTAGCCGCTCATGGTT 20216 || ||||| ||||||||| Sbjct 52548 TATTGTAGCTACTCATGGTT 52567 >seq8630 Length=23577 Score = 113 bits (124), Expect = 1e-20 Identities = 105/132 (80%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTA-GCCGCTCATGGTTACTT 20220 |||||||| ||||| ||||| || || || || || |||||| || ||||||||||| || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 20221 TGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCT 20280 ||| || || ||||||||||| ||| |||||||||| |||||| |||| ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 20281 TGCTGCCTGGCC 20292 || || ||||| Sbjct 7617 AGCCGCTTGGCC 7628 >seq4835 Length=43218 Score = 95.1 bits (104), Expect = 4e-15 Identities = 102/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| ||||| ||||| || || || || || |||||||| ||||||||||| ||| Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCT----CTACACTTCTT 20277 || | || ||||||||||| ||| ||||||||| |||||| |||| ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 20278 CCTTGCTGCCTGGCC 20292 | || || ||||| Sbjct 9179 ATTAGCCGCTTGGCC 9193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148143788844852