Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq5412 311 3e-80 seq8546 239 1e-58 seq29420 152 2e-32 seq59 143 8e-30 seq8630 113 1e-20 seq4835 95.1 4e-15 >seq5412 Length=31808 Score = 311 bits (344), Expect = 3e-80 Identities = 458/646 (71%), Gaps = 8/646 (1%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| || |||||||| || || || || || |||||||| || || |||||||| Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAAT 28845 |||| |||||| || |||||||| || || || || ||| | | | || | Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117 Query 28846 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 28905 || || || | ||||| || ||||| ||||||||| || ||||||||||| | ||| Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057 Query 28906 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 28965 || || || || | | || | || || |||||| | |||| || | ||||||| Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997 Query 28966 GGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATAC 29025 || || |||||||||||||| | || || || ||| | || |||||| ||| || || Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937 Query 29026 TCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCT 29085 ||||| || || || | || |||| |||||| | |||||||| | ||| |||| Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGC 14877 Query 29086 TTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAA 29145 ||| | | |||||| | || ||||| || || ||||||| |||| | || ||||| Sbjct 14876 TTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 14817 Query 29146 GCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGT 29205 || || || ||||| || |||||||| || |||||| | ||||| ||||| || |||| Sbjct 14816 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGAC 14757 Query 29206 GGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGAC 29264 |||| ||||| || ||| ||||| | || || | | | ||| | | || || Sbjct 14756 GGCTACCTATTCAG------GCATGGTTCTTTGGTAACCT-CGAGTTTGATCAGGGAAAC 14704 Query 29265 GACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAA 29324 || ||| | ||| || | ||||||| | |||| ||||| |||||||||||||| Sbjct 14703 CACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAA 14644 Query 29325 CATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATAT 29370 |||||||| ||||| ||||| ||||| || || |||||||||||| Sbjct 14643 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 105 bits (116), Expect = 2e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||||||| |||||||||||||||||| || | || ||| ||||||| || | ||||| Sbjct 14564 GGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCACTAACCTTGGTATGGAAGTT 14505 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||||| |||||||||| ||||||||| || || || || Sbjct 14504 ATGCATGAACGTAATGCTCCTAACTTCCCTCTCGACCTAGC 14464 >seq8546 Length=31398 Score = 239 bits (264), Expect = 1e-58 Identities = 320/442 (72%), Gaps = 6/442 (1%) Strand=Plus/Minus Query 29176 CACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCG 29235 |||||| | ||||| ||||| || ||||| ||||| |||| |||| ||||| ||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 29236 CTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTA 29294 | || || || | | ||| | | || || || ||| | | || || | ||||| Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086 Query 29295 CAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACG 29354 || ||||| ||||| || || ||| | || || ||||| ||||| ||||| ||||| || Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 29355 TTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 29414 || ||||||||||||||| |||||| || | |||| |||| |||||| | | ||| Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 29415 CTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCT 29474 ||||| || ||||| || ||||| || | || || || ||| ||||| |||| || Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 29475 GAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTG 29534 ||||| || || || ||||| || | | || | | |||||||| |||| ||| Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA----TTG 12850 Query 29535 GGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCA 29594 ||| ||| || | || ||||||||||| || | ||||| |||||||| ||||||||||| Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 29595 TAACTTCCCACTTGATCTGGCT 29616 |||||||| || || || ||| Sbjct 12789 TAACTTCCATCTAGACCTAGCT 12768 >seq29420 Length=7120 Score = 152 bits (168), Expect = 2e-32 Identities = 237/337 (70%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 28747 GCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGA 28806 || || || || || |||||||| || || |||||||| ||||| |||||| | ||| Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 28807 AACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCT 28864 ||||| || || || || | | | | |||| | || ||| || || | ||||| | Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGC--TGCTATAGGTTTGCACTTTT 3533 Query 28865 ACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAAC 28924 | ||||| ||||||||| || ||||||||||| | ||||| || || || | | | Sbjct 3534 ATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGC 3593 Query 28925 TTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTA 28984 | || || |||||| | |||| || | ||||||||| || ||||||||||||| Sbjct 3594 TAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA 3653 Query 28985 GCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGG 29044 | | || || || ||| | || |||||| ||| || || |||| ||| || || || | Sbjct 3654 GTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713 Query 29045 CATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGG 29081 | || | ||||| | |||||||| | |||||||| Sbjct 3714 CTACTACTATTTTCTTGATCTACCCAATTGGTCAAGG 3750 >seq59 Length=339703 Score = 143 bits (158), Expect = 8e-30 Identities = 182/248 (73%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 29098 ATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAAC 29157 |||||| | || |||| || || ||||||| |||| | || ||||| || || || ||| Sbjct 52321 ATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGAGCACAAC 52380 Query 29158 ATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTT 29217 || || |||||||| || |||||| | |||| ||||| || ||||| ||||| ||||| Sbjct 52381 ATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTCCCTATTC 52440 Query 29218 AGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACAT 29276 |||| ||||| ||||| | || || || | ||| | | || || || ||| | Sbjct 52441 AGTGTTATGCATGGTTCTTTGGTAACCTCGA-GTTTGATTAGGGAAACCACAGAAAATGA 52499 Query 29277 CTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGC 29336 ||| || | ||||||| |||||| ||||| |||||||||||||| || ||||| | Sbjct 52500 ATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAATATTGTAGCTAC 52559 Query 29337 TCACGGTT 29344 ||| |||| Sbjct 52560 TCATGGTT 52567 >seq8630 Length=23577 Score = 113 bits (124), Expect = 1e-20 Identities = 105/132 (80%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTA-GCCGCTCACGGTTACTT 29348 |||||||| ||||| ||||| || || ||||| || |||||| || ||||| ||||| || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 29349 TGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCT 29408 ||| || || ||||||||||||||| |||||| ||| |||||| |||| ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 29409 TGCTGCCTGGCC 29420 || || ||||| Sbjct 7617 AGCCGCTTGGCC 7628 >seq4835 Length=43218 Score = 95.1 bits (104), Expect = 4e-15 Identities = 102/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| ||||| ||||| || || ||||| || |||||||| ||||| ||||| ||| Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCT----CTACACTTCTT 29405 || | || ||||||||||||||| |||||| || |||||| |||| ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 29406 CCTTGCTGCCTGGCC 29420 | || || ||||| Sbjct 9179 ATTAGCCGCTTGGCC 9193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145990545359524