Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq5412 378 2e-100 seq8546 219 1e-52 seq25216 206 7e-49 seq29420 190 6e-44 seq59 178 4e-40 seq8630 105 2e-18 seq4835 82.4 2e-11 >seq5412 Length=31808 Score = 378 bits (418), Expect = 2e-100 Identities = 472/645 (73%), Gaps = 8/645 (1%) Strand=Plus/Minus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| |||||||||||||| ||||| ||||| |||||||| || || || |||||| Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 18936 || ||||||||| |||||||| || || || || ||| | ||| || | Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117 Query 18937 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 18996 || || || | ||||| || ||||| ||||||||| || ||||||||||| | ||| Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057 Query 18997 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 19056 || || || || | | || | || || |||||| | |||| || | ||||||| Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997 Query 19057 GGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTAC 19116 || || |||||||||||||| | || || || ||||||||||||||| |||||| || Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937 Query 19117 TCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCC 19176 ||||| |||||||| | || |||| || ||| | |||| ||| ||||| |||| | Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGC 14877 Query 19177 TTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAG 19236 ||| | | ||||||| | || ||| |||||| ||||||| |||| ||||||||||| Sbjct 14876 TTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 14817 Query 19237 GCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGC 19296 ||||| || |||||||| |||||||| || |||||| | || || |||||||| |||| | Sbjct 14816 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGAC 14757 Query 19297 GGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAAC 19355 || | ||||| || ||| ||||| | || || | | | ||| | | ||||| Sbjct 14756 GGCTACCTATTCAG------GCATGGTTCTTTGGTAACCT-CGAGTTTGATCAGGGAAAC 14704 Query 19356 TACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAA 19415 || ||| | | |||| || | || |||| | |||| ||||| |||||||||||||| Sbjct 14703 CACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAA 14644 Query 19416 CATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTA 19460 || || ||||||||||| |||||||| || | || ||||| || Sbjct 14643 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 91.5 bits (100), Expect = 4e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| ||| ||||||||||||| ||| | || || ||||||| || | || || Sbjct 14564 GGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCACTAACCTTGGTATGGAAGTT 14505 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||| ||||||||||||| ||||||||| || || Sbjct 14504 ATGCATGAACGTAATGCTCCTAACTTCCCTCTCGA 14470 >seq8546 Length=31398 Score = 219 bits (242), Expect = 1e-52 Identities = 307/428 (72%), Gaps = 6/428 (1%) Strand=Plus/Minus Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326 |||||| | || || |||||||| |||||||| || |||| |||| ||||| ||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 19327 CTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 | || || || | | ||| | | ||||| || ||| | ||| || | || || Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445 || ||||| ||||| || || ||| | || ||||| ||||||||||| |||||||| || Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGC 19505 | || ||||| || || |||||| || | |||| |||||||||| || | ||| Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 19506 TTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTT 19565 ||||||||| || || || |||||| | | | || | || || |||||||| | | | Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 19566 GAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTG 19625 || ||||| || || ||||| || | |||| | | |||||||| ||| ||| Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT----ATTG 12850 Query 19626 GGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCA 19685 ||| || ||| | || || |||||||| || | || || ||||| |||||||||||||| Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 19686 TAACTTCC 19693 |||||||| Sbjct 12789 TAACTTCC 12782 >seq25216 Length=8180 Score = 206 bits (228), Expect = 7e-49 Identities = 189/239 (79%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||||||||||||| | |||| || |||||||||||||| || || |||| || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206 ||| | |||| ||| |||||||||| |||| || | ||||||| | || ||| | Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266 ||||| ||||||| |||| ||||||||||| |||| || |||||||| |||||||| || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325 |||||| | || || | |||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 7015 >seq29420 Length=7120 Score = 190 bits (210), Expect = 6e-44 Identities = 261/363 (72%), Gaps = 4/363 (1%) Strand=Plus/Plus Query 18834 TGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTA 18893 || ||| ||||| ||||| |||||||| || || || |||||| | || ||||||| | Sbjct 3412 TGTTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCA 3471 Query 18894 TGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACAC 18951 |||||||| || || || || | | | |||||| | || ||| || || | ||| Sbjct 3472 CGGAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGC--TGCTATAGGTTTGCAC 3529 Query 18952 TTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 19011 || || ||||| ||||||||| || ||||||||||| | ||||| || || || | Sbjct 3530 TTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 3589 Query 19012 CAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAA 19071 | || || || |||||| | |||| || | ||||||||| || ||||||||| Sbjct 3590 GAGCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 3649 Query 19072 CTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCC 19131 ||||| | || || || ||||||||||||||| |||||| || |||| ||||||||| Sbjct 3650 CTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCG 3709 Query 19132 GCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATG 19191 || || || | | ||| | |||| ||| |||||||||| |||| || | |||| Sbjct 3710 GCTGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 3769 Query 19192 CCT 19194 ||| Sbjct 3770 CCT 3772 >seq59 Length=339703 Score = 178 bits (196), Expect = 4e-40 Identities = 189/247 (77%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||| | || || |||||| ||||||| |||| |||||||||| ||||| || || Sbjct 52320 TATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGAGCACAA 52379 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 |||||| |||||||| || |||||| | | || |||||||| |||||||| || ||||| Sbjct 52380 CATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTCCCTATT 52439 Query 19308 TAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGG 19366 |||| ||||| ||||| | || || || | ||| | | ||||| || ||| | | Sbjct 52440 CAGTGTTATGCATGGTTCTTTGGTAACCTCGA-GTTTGATTAGGGAAACCACAGAAAATG 52498 Query 19367 TATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTG 19426 |||| || | || |||| |||||| ||||| |||||||||||||| ||||| ||| Sbjct 52499 AATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAATATTGTAGCTA 52558 Query 19427 CTCATGG 19433 ||||||| Sbjct 52559 CTCATGG 52565 >seq8630 Length=23577 Score = 105 bits (116), Expect = 2e-18 Identities = 104/133 (78%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTT-GCTGCTCATGGGTATTT 19439 || ||||| ||||| ||||| || || ||||| || || || ||||||||||| ||||| Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 |||||| | || ||||| || || ||||||||| |||||| |||||||||| || Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 19500 GGCTGCTTGGCCT 19512 || ||||||||| Sbjct 7617 AGCCGCTTGGCCT 7629 >seq4835 Length=43218 Score = 82.4 bits (90), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || |||| ||||| ||||| || || ||||| || || || ||||||||||| |||||| Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCT----CTACATTTCTT 19496 || | | || ||||| || || |||||||| |||||| |||||||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 19497 TTTGGCTGCTTGGCCT 19512 || || ||||||||| Sbjct 9179 ATTAGCCGCTTGGCCT 9194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140499137417652