Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 378 2e-100
seq8546 219 1e-52
seq25216 206 7e-49
seq29420 190 6e-44
seq59 178 4e-40
seq8630 105 2e-18
seq4835 82.4 2e-11
>seq5412
Length=31808
Score = 378 bits (418), Expect = 2e-100
Identities = 472/645 (73%), Gaps = 8/645 (1%)
Strand=Plus/Minus
Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876
|| ||||| |||||||||||||| ||||| ||||| |||||||| || || || ||||||
Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177
Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 18936
|| ||||||||| |||||||| || || || || ||| | ||| || |
Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117
Query 18937 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 18996
|| || || | ||||| || ||||| ||||||||| || ||||||||||| | |||
Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057
Query 18997 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 19056
|| || || || | | || | || || |||||| | |||| || | |||||||
Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997
Query 19057 GGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTAC 19116
|| || |||||||||||||| | || || || ||||||||||||||| |||||| ||
Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937
Query 19117 TCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCC 19176
||||| |||||||| | || |||| || ||| | |||| ||| ||||| |||| |
Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGC 14877
Query 19177 TTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAG 19236
||| | | ||||||| | || ||| |||||| ||||||| |||| |||||||||||
Sbjct 14876 TTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 14817
Query 19237 GCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGC 19296
||||| || |||||||| |||||||| || |||||| | || || |||||||| |||| |
Sbjct 14816 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGAC 14757
Query 19297 GGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAAC 19355
|| | ||||| || ||| ||||| | || || | | | ||| | | |||||
Sbjct 14756 GGCTACCTATTCAG------GCATGGTTCTTTGGTAACCT-CGAGTTTGATCAGGGAAAC 14704
Query 19356 TACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAA 19415
|| ||| | | |||| || | || |||| | |||| ||||| ||||||||||||||
Sbjct 14703 CACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAA 14644
Query 19416 CATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTA 19460
|| || ||||||||||| |||||||| || | || ||||| ||
Sbjct 14643 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14599
Score = 91.5 bits (100), Expect = 4e-14
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665
|||||||| ||| ||||||||||||| ||| | || || ||||||| || | || ||
Sbjct 14564 GGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGCACTAACCTTGGTATGGAAGTT 14505
Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700
||||| ||||||||||||| ||||||||| || ||
Sbjct 14504 ATGCATGAACGTAATGCTCCTAACTTCCCTCTCGA 14470
>seq8546
Length=31398
Score = 219 bits (242), Expect = 1e-52
Identities = 307/428 (72%), Gaps = 6/428 (1%)
Strand=Plus/Minus
Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCG 19326
|||||| | || || |||||||| |||||||| || |||| |||| ||||| |||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 19327 CTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385
| || || || | | ||| | | ||||| || ||| | ||| || | || ||
Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086
Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445
|| ||||| ||||| || || ||| | || ||||| ||||||||||| |||||||| ||
Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026
Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGC 19505
| || ||||| || || |||||| || | |||| |||||||||| || | |||
Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966
Query 19506 TTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTT 19565
||||||||| || || || |||||| | | | || | || || |||||||| | | |
Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906
Query 19566 GAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTG 19625
|| ||||| || || ||||| || | |||| | | |||||||| ||| |||
Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT----ATTG 12850
Query 19626 GGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCA 19685
||| || ||| | || || |||||||| || | || || ||||| ||||||||||||||
Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790
Query 19686 TAACTTCC 19693
||||||||
Sbjct 12789 TAACTTCC 12782
>seq25216
Length=8180
Score = 206 bits (228), Expect = 7e-49
Identities = 189/239 (79%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146
|| ||||||||||||||| | |||| || |||||||||||||| || || |||| ||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 19147 TTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGT 19206
||| | |||| ||| |||||||||| |||| || | ||||||| | || ||| |
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 19207 GGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTC 19266
||||| ||||||| |||| ||||||||||| |||| || |||||||| |||||||| ||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 19267 CACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325
|||||| | || || | |||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTC 7015
>seq29420
Length=7120
Score = 190 bits (210), Expect = 6e-44
Identities = 261/363 (72%), Gaps = 4/363 (1%)
Strand=Plus/Plus
Query 18834 TGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTA 18893
|| ||| ||||| ||||| |||||||| || || || |||||| | || ||||||| |
Sbjct 3412 TGTTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCA 3471
Query 18894 TGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACAC 18951
|||||||| || || || || | | | |||||| | || ||| || || | |||
Sbjct 3472 CGGAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGC--TGCTATAGGTTTGCAC 3529
Query 18952 TTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 19011
|| || ||||| ||||||||| || ||||||||||| | ||||| || || || |
Sbjct 3530 TTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTAT 3589
Query 19012 CAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAA 19071
| || || || |||||| | |||| || | ||||||||| || |||||||||
Sbjct 3590 GAGCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 3649
Query 19072 CTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCC 19131
||||| | || || || ||||||||||||||| |||||| || |||| |||||||||
Sbjct 3650 CTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCG 3709
Query 19132 GCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATG 19191
|| || || | | ||| | |||| ||| |||||||||| |||| || | ||||
Sbjct 3710 GCTGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 3769
Query 19192 CCT 19194
|||
Sbjct 3770 CCT 3772
>seq59
Length=339703
Score = 178 bits (196), Expect = 4e-40
Identities = 189/247 (77%), Gaps = 2/247 (1%)
Strand=Plus/Plus
Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247
||||||| | || || |||||| ||||||| |||| |||||||||| ||||| || ||
Sbjct 52320 TATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGAGCACAA 52379
Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307
|||||| |||||||| || |||||| | | || |||||||| |||||||| || |||||
Sbjct 52380 CATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTCCCTATT 52439
Query 19308 TAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGG 19366
|||| ||||| ||||| | || || || | ||| | | ||||| || ||| | |
Sbjct 52440 CAGTGTTATGCATGGTTCTTTGGTAACCTCGA-GTTTGATTAGGGAAACCACAGAAAATG 52498
Query 19367 TATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTG 19426
|||| || | || |||| |||||| ||||| |||||||||||||| ||||| |||
Sbjct 52499 AATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAATATTGTAGCTA 52558
Query 19427 CTCATGG 19433
|||||||
Sbjct 52559 CTCATGG 52565
>seq8630
Length=23577
Score = 105 bits (116), Expect = 2e-18
Identities = 104/133 (78%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTT-GCTGCTCATGGGTATTT 19439
|| ||||| ||||| ||||| || || ||||| || || || ||||||||||| |||||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499
|||||| | || ||||| || || ||||||||| |||||| |||||||||| ||
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616
Query 19500 GGCTGCTTGGCCT 19512
|| |||||||||
Sbjct 7617 AGCCGCTTGGCCT 7629
>seq4835
Length=43218
Score = 82.4 bits (90), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440
|| |||| ||||| ||||| || || ||||| || || || ||||||||||| ||||||
Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118
Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCT----CTACATTTCTT 19496
|| | | || ||||| || || |||||||| |||||| ||||||||||
Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178
Query 19497 TTTGGCTGCTTGGCCT 19512
|| || |||||||||
Sbjct 9179 ATTAGCCGCTTGGCCT 9194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 140499137417652
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