Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq9434 89.7 5e-13 seq48644 84.2 2e-11 seq45117 84.2 2e-11 >seq9434 Length=50679 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGG 131960 ||||| ||| | |||| ||| | | ||||| || || || |||||||| ||| || Sbjct 44944 ACGCAGGCGAAGGACCAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCTAGTG- 45002 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 ||||| ||||||||| || || |||| | |||| || | || || || || || || | Sbjct 45003 TACGCCCATCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGGGATAC 45062 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 |||||||||| |||||| || | | || | ||| || | ||| || || | Sbjct 45063 CTTCTTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCGACCTCAA 45122 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| |||||||| ||||| | ||||||||||| Sbjct 45123 GAGTTATGGTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCAT 45165 >seq48644 Length=2856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||||||||||| | |||||| || || |||||||| |||| Sbjct 1867 GACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCG 1926 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || |||||||| || || || || ||||| Sbjct 1927 AAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACA 1986 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | || || || | || | ||| || || || || ||||| Sbjct 1987 TTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTC 2046 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 2047 ACAAAGATCTGCAT 2060 >seq45117 Length=3449 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||||||||||| | |||||| || || |||||||| |||| Sbjct 2460 GACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCG 2519 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || |||||||| || || || || ||||| Sbjct 2520 AAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACA 2579 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | || || || | || | ||| || || || || ||||| Sbjct 2580 TTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTC 2639 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 2640 ACAAAGATCTGCAT 2653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474302054481840