Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq270 221 2e-51 seq4197 199 6e-45 >seq270 Length=105985 Score = 221 bits (244), Expect = 2e-51 Identities = 379/539 (70%), Gaps = 17/539 (3%) Strand=Plus/Minus Query 1455741 ACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCC 1455800 ||||||| | ||||||| |||| |||| ||| ||||| |||||| | |||| || Sbjct 92380 ACCGCTTCTGCATGTTCCCAATCCAATACCCCAAGATCTGGGAGATGTACAAGAAAG-CC 92322 Query 1455801 GAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACA-CGGTCCACTGGGT 1455859 || |||||||| |||||||||||||||||||| || || | | ||| |||||| Sbjct 92321 GAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTAACTCAAGATATCCGTC-ACTGGGA 92263 Query 1455860 GT---CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCG 1455916 | | || | | ||||||| ||||||||| |||||||||||||| || ||||| Sbjct 92262 GGAAACTCTAACCACCGACGAGAAACATTTCATCTCTCACGTCCTCGCCTTCTT-CGCCG 92204 Query 1455917 CCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGC 1455976 || ||| || ||||| ||||||||| ||||| | || ||||| || |||| | Sbjct 92203 CCTCCGACGGAATCGTTCTCGAGAACCTCGCCGGAAGGTTCATGAATGATATCCAGGTCT 92144 Query 1455977 CAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCT 1456036 | ||||| || || || || ||||||||||| | || |||||||| ||||| | | Sbjct 92143 CCGAGGCTCGCGCCTTCTATGGTTTCCAGATCGCAGTTGAGAACATCCATTCTGAGATGT 92084 Query 1456037 ACTCGCTCCTGATCGACAC-CTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095 || ||||| || | || ||| || |||| | | ||||||| ||| |||||| | | Sbjct 92083 ACAGCCTCCTCATTCAAACGCTAATTC-GGGACTCCGACGAGAAGCACCGCCTCTTCCAC 92025 Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155 || || ||||| | || | || | || ||||| | ||||| || |||||| Sbjct 92024 GCAATTGACACCATCCCTGCCGTCACAAAGAAGGCGCAGTGGGCCTTGCGATGGATC--- 91968 Query 1456156 AAGGAGGGCCTCG-ACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATC 1456213 || | || | ||| |||||||| |||||| || || |||| || |||||| Sbjct 91967 ---GATTCCTCCGAATCCTTCGCCGAGCGAATCGTCGCTTTCGCTTGCGTGGAAGGCATC 91911 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 || ||||| || || ||||||||| | || ||||| || || ||||| || ||||| || Sbjct 91910 TTCTTCTCCGGAAGCTTCTGCGCCGTATTCTGGCTAAAAAAACGCGGTCTGATGCCAGG 91852 >seq4197 Length=36674 Score = 199 bits (220), Expect = 6e-45 Identities = 390/565 (69%), Gaps = 16/565 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| ||| || | || |||||||| ||||| || |||||||| ||||| || Sbjct 23996 TGTTCCCGATCAAGTATCCTCGCATATGGGAGATGTAT-AAGAAGGCCGAAGCCTCGTTC 23938 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTCCACTGGGTGT---CGCTGAG 1455868 ||||||||||||||||| |||||| || | | ||| | |||| | | || | Sbjct 23937 TGGACCGCCGAGGAGGTTGACCTCTCACAAGATCTCCGTC-ATTGGGAGGAAACCCTAAC 23879 Query 1455869 CGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCA 1455928 || ||| || || ||| || ||||||||||| || ||| ||| ||| || | Sbjct 23878 TTCTGATGAGAAGCACTTTATCTCTCATGTCCTCGCCTTCTT-CGCAGCCTCCGACGGGA 23820 Query 1455929 TCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTT 1455988 ||||| |||||| || || || | || ||||| ||| |||| | | ||||| || Sbjct 23819 TCGTGCTCGAGAATCTCGCTGGGAGGTTCATGAAGGAGATCCAGGTTTCCGAGGCTCGCG 23760 Query 1455989 TGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGA 1456048 || ||||| ||||||||||| ||||| || ||||||||||||| ||| || || Sbjct 23759 CCTTCTACGGCTTCCAGATCGCAATCGAGAATATCCACTCTGAAATGTACAGCCTTCTTC 23700 Query 1456049 TCGACACC-TACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACG 1456107 |||| ||| | || || || || ||||||| ||| ||||| | ||||||||| || Sbjct 23699 TCGAAACCCTGATTCGAG-ACTCGTCCGAGAAGCACCGGCTCTTCCACGCCATCGATACT 23641 Query 1456108 GTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC 1456167 || || | || | || || |||||||||||| | ||||| | | | Sbjct 23640 GTTCCCGCTGTCACCAAGAAAGCCGACTGGGCGCTCCGCTGGATTGATTCCG-----CAG 23586 Query 1456168 GACACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCA 1456226 | ||| || ||||| | || | |||||| |||| || || ||||| ||||| || | Sbjct 23585 AATCCTTCGCTGAGCGCATAGTTGCTTTTGCCTGCGTTGAAGGTATCTTCTTCTCTGGAA 23526 Query 1456227 GTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC 1456286 | |||||||| || |||||||| || ||||| || || ||||| || | | ||| Sbjct 23525 GCTTCTGCGCGATATTTTGGCTAAAAAAGCGAGGACTGATGCCTGGAC-TAACCTTCTCG 23467 Query 1456287 AACGAATTTATCAGTCGCGACGAAG 1456311 ||||| || ||| |||||||||| Sbjct 23466 AACGAGTTGATCTCCCGCGACGAAG 23442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7140427046302228