Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq184 132 4e-26 seq48644 125 6e-24 seq45117 125 6e-24 seq35801 125 6e-24 seq22012 125 6e-24 seq9434 109 5e-19 seq10588 104 2e-17 seq87 100 3e-16 seq4209 93.3 4e-14 seq1982 89.7 5e-13 seq1077 89.7 5e-13 >seq184 Length=120086 Score = 132 bits (146), Expect = 4e-26 Identities = 171/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| ||||| || || ||||||||||| Sbjct 5453 CCACCACGAAGACGAAGCACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCG 5394 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || || ||||||||||| || || || | ||| |||||||| | ||| Sbjct 5393 AGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGA 5334 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| ||||||| ||||| | | | | |||||| ||||| ||| Sbjct 5333 ATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCGGAGGATTCGACC 5274 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744 || | || ||||| |||||||||| ||||| || || ||||||| ||| |||| Sbjct 5273 TCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACGAAAATCTGCA-TCTTTGCG 5220 >seq48644 Length=2856 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| |||||||||||||||||| ||||| Sbjct 1834 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 1893 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || ||||| || || || || || | ||||||||||||| || Sbjct 1894 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1953 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| |||| | | | | |||||| ||||| ||| Sbjct 1954 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2013 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || ||||| || || || | ||||||||||| |||||||| Sbjct 2014 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCAT 2060 >seq45117 Length=3449 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| |||||||||||||||||| ||||| Sbjct 2427 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 2486 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || ||||| || || || || || | ||||||||||||| || Sbjct 2487 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2546 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| |||| | | | | |||||| ||||| ||| Sbjct 2547 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2606 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || ||||| || || || | ||||||||||| |||||||| Sbjct 2607 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCAT 2653 >seq35801 Length=5147 Score = 125 bits (138), Expect = 6e-24 Identities = 146/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||| ||||| || || | || || |||||||| || ||||| Sbjct 320 TCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAG 261 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | |||| | |||||||||| ||||| ||| | | | Sbjct 260 ATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTA 201 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| ||| ||| ||||| | ||||| || || || |||||||| || Sbjct 200 TCTATGGTGTCCGAGCT---TTCAACCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTG 144 Query 35723 ACAAATATCTGCATTC 35738 || ||||||||||||| Sbjct 143 ACGAATATCTGCATTC 128 >seq22012 Length=9549 Score = 125 bits (138), Expect = 6e-24 Identities = 146/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||| ||||| || || | || || ||||||||||| ||||| Sbjct 5877 TCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAG 5936 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | |||| | |||||||||| ||||| ||| | | | Sbjct 5937 ATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTA 5996 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| ||| ||| ||||| | ||||| || || || || ||||| || Sbjct 5997 TCTATGGTGTCCGAGCT---TTCAACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTA 6053 Query 35723 ACAAATATCTGCATTC 35738 || ||||||||||||| Sbjct 6054 ACGAATATCTGCATTC 6069 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | |||||| | || | ||| |||||| |||||||||||||||| Sbjct 6067 TTCCACCACGAAGACGCAACACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGG 6126 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 | || || || | || || || |||||||| ||||| |||| || || ||||| Sbjct 6127 CTAATGTACGGCCATCCTCGAGTTGCTTACCAGCAAAGATCAGCCTTTGTTGGTC 6181 >seq9434 Length=50679 Score = 109 bits (120), Expect = 5e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||| ||||| || | || || | || ||||| ||||| || ||||| Sbjct 44746 CTCCTTCTGAATGTTATAATCAGCTAGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAA 44805 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 |||| ||||||||||| | ||||| | ||||||||| ||| ||| | ||| | | Sbjct 44806 GATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCC-TGAATTTTAGCCTTAACAT 44864 Query 35664 TTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | || || ||| ||| ||||||| ||||| ||||| || ||||| || | Sbjct 44865 TGTCGATTGTATCAGAGCT---TTCAACCTCCAAGGTGATGGTTTTTCCAGTCAATGTCT 44921 Query 35721 TCACAAATATCTGCAT 35736 |||||||||| ||||| Sbjct 44922 TCACAAATATTTGCAT 44937 Score = 100 bits (110), Expect = 3e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | | |||||| || | || ||||||||||||||| || || | Sbjct 45165 TTCCTCCACGGAGACGAAGCACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAGTCTG 45224 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | | || || |||||||| || ||||| ||||||| ||| ||||| | | Sbjct 45225 CTAATGTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCTGGTG 45284 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 ||| | |||||| ||| ||||| ||| | | | | | ||||| |||| | Sbjct 45285 GAATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGTGTCCGAGCTC---T 45341 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||| ||||| || || || |||| || || ||||| |||||||| Sbjct 45342 CCACTTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 45393 >seq10588 Length=20159 Score = 104 bits (114), Expect = 2e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || |||||||| || | ||||| | || || |||||||| || ||||| Sbjct 1288 CTCCTTCTGGATATTGTAATCAGCTAGGGTTCTTCCATCCTCGAGCTGCTTTCCAGCAAA 1347 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||||| |||| | |||||||||| |||||| ||||| || Sbjct 1348 GATAAGCCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 1406 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | ||||| |||| || ||||||| ||||| || || || || | || | Sbjct 1407 TGTCGATGGTGTCGGAGCTC---TCAACCTCCAAGGTGATAGTCTTTCCAGTGAGCGTCT 1463 Query 35721 TCACAAATATCTGCAT 35736 | ||||| |||||||| Sbjct 1464 TGACAAAGATCTGCAT 1479 >seq87 Length=177581 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||| ||||| ||||| || | | || || |||||||| || ||||| Sbjct 54702 CTCCTTTTGAATGTTATAATCTGCCAATGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAA 54761 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| |||||| || | |||| | ||| || ||| ||||| ||||| | | Sbjct 54762 AATCAACCTCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTCGCCTTCACATT 54821 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| ||||| |||| || || || || || |||| || || Sbjct 54822 GTCAATTGTGTCCGAGCTC---TCCACTTCCAATGTAATGGTCTTTCCGGTCAGGGTCTT 54878 Query 35722 CACAAATATCTGCAT 35736 ||| || |||||||| Sbjct 54879 CACGAAAATCTGCAT 54893 >seq4209 Length=73032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 7/200 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || || || | ||||| | || || |||||||| |||||||| Sbjct 42 CTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTACCATCCTCGAGCTGCTTGCCCGCAAA 101 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | |||||||| |||||| ||| | | | Sbjct 102 GATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 161 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||| | || || || || || ||||| ||||| Sbjct 162 GTCTATGGTGTCTGAGCTC---TCAACCTCTAGGGTTATGGTCTTTCCGGTCAATGTTTT 218 Query 35722 CACAAATATCTGCATTCTGT 35741 |||||| ||||||| ||||| Sbjct 219 CACAAAGATCTGCA-TCTGT 237 >seq1982 Length=56187 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639 |||| || |||||||| || || || || | ||||||||||||| || | | ||||| Sbjct 21938 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 21879 Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGA 35699 ||||| ||||| ||||| | | | | |||||| || || ||||| | || | Sbjct 21878 TGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTTA 21819 Query 35700 TCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || ||||| || |||||||| || |||||||| Sbjct 21818 TCGTCTTCCCCGTTAAGGTTTTCACGAAGATCTGCAT 21782 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639 |||| || |||||||| || || || || | ||||||||||||| || | | ||||| Sbjct 32275 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 32216 Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGA 35699 ||||| |||||| ||||| | | | | |||||| || || ||||| | || | Sbjct 32215 TGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTA 32156 Query 35700 TCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || ||||| | |||||||| || |||||||| Sbjct 32155 TCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCAT 32119 >seq1077 Length=76872 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| ||| | ||| |||||| |||| |||||| ||||| Sbjct 52849 CCACCACGAAGACGGATCACCAGATGAATCGTCGACTCCTTCTGAACGTTGTAGTCGGCG 52790 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || ||| || ||||| || || || |||| | || |||||||||| || Sbjct 52789 AGCGTACG---GTCTTCAAGCTGTTTTCCAGCGTATATTATCCTCTGCTGGTCCAGTGGG 52733 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC- 35688 |||| ||||||||| ||||| ||||| | | | |||||| || || || Sbjct 52732 ACGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTAAATGGTGTCGGAAGACTCGACT 52673 Query 35689 -CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||| ||| | || ||||| | || |||| ||||||||||| Sbjct 52672 CCTCTAGCGTTATCATCTTCCCCGTTAGTGTCCTCACGAATATCTGCAT 52624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448609538817520