Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq48644 145 8e-30 seq45117 145 8e-30 seq22012 118 1e-21 seq87 116 4e-21 seq35801 114 1e-20 seq9434 100 3e-16 seq36 96.9 3e-15 >seq48644 Length=2856 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || || || ||||||||||||||||||||| | Sbjct 1834 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 1893 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || ||||||||||| || || || | ||||||||| || || || Sbjct 1894 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1953 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||| || ||| | |||||||| ||||| || Sbjct 1954 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2013 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || || || || ||||||| ||||| || || || ||||| || Sbjct 2014 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063 >seq45117 Length=3449 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || || || ||||||||||||||||||||| | Sbjct 2427 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 2486 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || ||||||||||| || || || | ||||||||| || || || Sbjct 2487 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2546 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||| || ||| | |||||||| ||||| || Sbjct 2547 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2606 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || || || || ||||||| ||||| || || || ||||| || Sbjct 2607 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656 >seq22012 Length=9549 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542 || || || | ||| || | || ||||| || || |||||||| ||||||||||| || Sbjct 5838 TTACCACCACGGAGACGAAGAACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCA 5897 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 ||||| || | || |||||||| || || ||||| ||||| | |||||| || || Sbjct 5898 GCCAA-TGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGG 5956 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 ||| || || || || || ||||| || ||||| || | ||||| || ||| Sbjct 5957 CGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTC 6016 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || || || || || |||||||| |||||||| || |||||| Sbjct 6017 AACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTAACGAATATCTGCATT 6068 >seq87 Length=177581 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | || ||||| || || || |||||||||||||| || || ||| Sbjct 54667 CCTCCACGAAGACGAAGGACCAGGTGGAGAGTTGACTCCTTTTGAATGTTATAATCTGCC 54726 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | || || ||||| || |||||||||||||| | ||||||||| || || Sbjct 54727 AATGTCCTTCCA-TCTTCAAGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCTGGTGG 54785 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || ||||| || ||||| || || || ||| | |||||| || ||||| Sbjct 54786 AATTCCCTCTTTATCCTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGAGCTCTCCAC 54845 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||||| || ||||| | || || |||||||| ||||| Sbjct 54846 TTCCAATGTAATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 54893 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || ||||| || ||||| ||||| || || || ||||| | Sbjct 55579 CCTCCACGAAGACGGAGAACCAGGTGGAGTGTGGACTCCTTCTGGATATTATAGTCAGCT 55638 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| ||| || || || || || ||||| |||| | |||||||| || || Sbjct 55639 AGGGTTCTTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGA 55698 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||||||||| || || ||| | |||||| || ||| || Sbjct 55699 ATCCCCTCCTTATCTTGAATTTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCGACC 55758 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| ||||| || | ||||| ||||| || ||||| Sbjct 55759 TCAAGAGTGATGGTCTTACCTGTAAGTGTTTTCACGAAGATCTGCAT 55805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || || || || | ||| | ||| || ||||||||||| || || || || || Sbjct 55349 TTCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCTG 55408 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| || || || | || || || ||||| || | | ||| || || || | Sbjct 55409 CAAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGG 55468 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || || || || || || || ||| | ||||||||| || | Sbjct 55469 GAATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTGTCGGAGCTCTCAA 55528 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || || || || || |||| || || || || |||||||| Sbjct 55529 CTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 55577 >seq35801 Length=5147 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542 || || || | ||| || | || ||||| || || |||||||| ||||||||||| || Sbjct 359 TTACCACCACGGAGACGAAGAACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCA 300 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 ||||| || | || |||||||| || || ||||| ||||| | |||||| || || Sbjct 299 GCCAA-TGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGG 241 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 ||| || || || || || ||||| || ||||| || | ||||| || ||| Sbjct 240 CGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTC 181 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || ||||| || || || ||||| || ||||| || |||||| Sbjct 180 AACCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAATATCTGCATT 129 >seq9434 Length=50679 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||||||||| || ||||| || || ||| ||| Sbjct 45632 AGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCAAGGGTCCTT 45691 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || || ||||| ||||| ||||| | ||||||||| || || || || || Sbjct 45692 CCATCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCC 45751 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || |||||| ||| | |||||| || || || || || || Sbjct 45752 TTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCAAGTGTG 45811 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || |||| || || ||||| || ||||| Sbjct 45812 ATAGTCTTGCCAGTTAGGGTCTTTACGAATATCTGCAT 45849 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||| | ||| || | ||| | ||| || || || |||||||||||||| ||||| | Sbjct 45165 TTCCTCCACGGAGACGAAGCACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAGTCTG 45224 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | || | | | || || ||||| || || ||||||||||| | ||| || || || Sbjct 45225 CTAATGTCCTTCCA-TCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCTGGT 45283 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || || || || ||||| || || || ||| | ||||| || ||| Sbjct 45284 GGAATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGTGTCCGAGCTCTCC 45343 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| ||||| || ||||| | || || || ||||| ||||| Sbjct 45344 ACTTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 45393 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || |||||||| ||||| || || ||| || || ||||| || Sbjct 45419 TGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCGAGTTGC 45478 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| | |||||| || || || || || || || || || |||||| Sbjct 45479 TTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATTTTT 45538 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | ||||| || ||||| || |||||||| ||||| || || Sbjct 45539 GCCTTCACGTTGTCAATGGTGTCTGAGCTCTCCACTTCCAGAGTAATAGTTTTCCCAGTA 45598 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || || ||||||||||| Sbjct 45599 AGGGTCTTGACAAAAATTTGCAT 45621 >seq36 Length=331580 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || |||||||||||||| || || ||||| || || |||||||| || Sbjct 256992 TTCCACCTCTAAGCCGCAACACGAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCAG 256933 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| |||| | || || | ||||| || ||||| |||| | ||||||||| || | Sbjct 256932 CAAGGGTGCGGCCATCCTCCAATTGTTTACCAGCAAATATCAGCCTCTGCTGATCAGGAG 256873 Query 134605 GTATGCCTTCTTTTTCTTGAA 134625 | || ||||| || || |||| Sbjct 256872 GAATACCTTCCTTGTCCTGAA 256852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502949782656880