Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 145 8e-30
seq45117 145 8e-30
seq22012 118 1e-21
seq87 116 4e-21
seq35801 114 1e-20
seq9434 100 3e-16
seq36 96.9 3e-15
>seq48644
Length=2856
Score = 145 bits (160), Expect = 8e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| ||||| || || || ||||||||||||||||||||| |
Sbjct 1834 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 1893
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || ||| || ||||||||||| || || || | ||||||||| || || ||
Sbjct 1894 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1953
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|||||||| || || || || || ||| || ||| | |||||||| ||||| ||
Sbjct 1954 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2013
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716
|| || || || || || ||||||| ||||| || || || ||||| ||
Sbjct 2014 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063
>seq45117
Length=3449
Score = 145 bits (160), Expect = 8e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| ||||| || || || ||||||||||||||||||||| |
Sbjct 2427 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 2486
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || ||| || ||||||||||| || || || | ||||||||| || || ||
Sbjct 2487 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2546
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|||||||| || || || || || ||| || ||| | |||||||| ||||| ||
Sbjct 2547 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2606
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716
|| || || || || || ||||||| ||||| || || || ||||| ||
Sbjct 2607 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656
>seq22012
Length=9549
Score = 118 bits (130), Expect = 1e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542
|| || || | ||| || | || ||||| || || |||||||| ||||||||||| ||
Sbjct 5838 TTACCACCACGGAGACGAAGAACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCA 5897
Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602
||||| || | || |||||||| || || ||||| ||||| | |||||| || ||
Sbjct 5898 GCCAA-TGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGG 5956
Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662
||| || || || || || ||||| || ||||| || | ||||| || |||
Sbjct 5957 CGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTC 6016
Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| ||||| || || || || || |||||||| |||||||| || ||||||
Sbjct 6017 AACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTAACGAATATCTGCATT 6068
>seq87
Length=177581
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
||||| | || || | || ||||| || || || |||||||||||||| || || |||
Sbjct 54667 CCTCCACGAAGACGAAGGACCAGGTGGAGAGTTGACTCCTTTTGAATGTTATAATCTGCC 54726
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| | | | || || ||||| || |||||||||||||| | ||||||||| || ||
Sbjct 54727 AATGTCCTTCCA-TCTTCAAGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCTGGTGG 54785
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| || ||||| || ||||| || || || ||| | |||||| || |||||
Sbjct 54786 AATTCCCTCTTTATCCTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGAGCTCTCCAC 54845
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| | |||||||| || ||||| | || || |||||||| |||||
Sbjct 54846 TTCCAATGTAATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 54893
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || || | || ||||| || ||||| ||||| || || || ||||| |
Sbjct 55579 CCTCCACGAAGACGGAGAACCAGGTGGAGTGTGGACTCCTTCTGGATATTATAGTCAGCT 55638
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| ||| || || || || || ||||| |||| | |||||||| || ||
Sbjct 55639 AGGGTTCTTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGA 55698
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || ||||||||||| || || ||| | |||||| || ||| ||
Sbjct 55699 ATCCCCTCCTTATCTTGAATTTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCGACC 55758
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| ||||| ||||| || | ||||| ||||| || |||||
Sbjct 55759 TCAAGAGTGATGGTCTTACCTGTAAGTGTTTTCACGAAGATCTGCAT 55805
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
|||| || || || || | ||| | ||| || ||||||||||| || || || || ||
Sbjct 55349 TTCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCTG 55408
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
||| ||| || || || | || || || ||||| || | | ||| || || || |
Sbjct 55409 CAAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGG 55468
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
| |||||||| || || || || || || || ||| | ||||||||| || |
Sbjct 55469 GAATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTGTCGGAGCTCTCAA 55528
Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
| ||||| || || || || || |||| || || || || ||||||||
Sbjct 55529 CTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 55577
>seq35801
Length=5147
Score = 114 bits (126), Expect = 1e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542
|| || || | ||| || | || ||||| || || |||||||| ||||||||||| ||
Sbjct 359 TTACCACCACGGAGACGAAGAACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCA 300
Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602
||||| || | || |||||||| || || ||||| ||||| | |||||| || ||
Sbjct 299 GCCAA-TGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGG 241
Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662
||| || || || || || ||||| || ||||| || | ||||| || |||
Sbjct 240 CGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTC 181
Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| ||||| || ||||| || || || ||||| || ||||| || ||||||
Sbjct 180 AACCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAATATCTGCATT 129
>seq9434
Length=50679
Score = 100 bits (110), Expect = 3e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| || ||||||||||| || ||||| || || ||| |||
Sbjct 45632 AGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCAAGGGTCCTT 45691
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || || || ||||| ||||| ||||| | ||||||||| || || || || ||
Sbjct 45692 CCATCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCC 45751
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| |||||||| || |||||| ||| | |||||| || || || || || ||
Sbjct 45752 TTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCAAGTGTG 45811
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || |||| || || ||||| || |||||
Sbjct 45812 ATAGTCTTGCCAGTTAGGGTCTTTACGAATATCTGCAT 45849
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543
||||||| | ||| || | ||| | ||| || || || |||||||||||||| ||||| |
Sbjct 45165 TTCCTCCACGGAGACGAAGCACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAGTCTG 45224
Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603
| || | | | || || ||||| || || ||||||||||| | ||| || || ||
Sbjct 45225 CTAATGTCCTTCCA-TCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCTGGT 45283
Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663
|| || || || || || ||||| || || || ||| | ||||| || |||
Sbjct 45284 GGAATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGTGTCCGAGCTCTCC 45343
Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || | ||| ||||| || ||||| | || || || ||||| |||||
Sbjct 45344 ACTTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 45393
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || || || |||||||| ||||| || || ||| || || ||||| ||
Sbjct 45419 TGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCGAGTTGC 45478
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || ||||| ||||| | |||||| || || || || || || || || || ||||||
Sbjct 45479 TTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATTTTT 45538
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|| || ||| | ||||| || ||||| || |||||||| ||||| || ||
Sbjct 45539 GCCTTCACGTTGTCAATGGTGTCTGAGCTCTCCACTTCCAGAGTAATAGTTTTCCCAGTA 45598
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
| || || || |||||||||||
Sbjct 45599 AGGGTCTTGACAAAAATTTGCAT 45621
>seq36
Length=331580
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
|||| ||||| || |||||||||||||| || || ||||| || || |||||||| ||
Sbjct 256992 TTCCACCTCTAAGCCGCAACACGAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCAG 256933
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
||| |||| | || || | ||||| || ||||| |||| | ||||||||| || |
Sbjct 256932 CAAGGGTGCGGCCATCCTCCAATTGTTTACCAGCAAATATCAGCCTCTGCTGATCAGGAG 256873
Query 134605 GTATGCCTTCTTTTTCTTGAA 134625
| || ||||| || || ||||
Sbjct 256872 GAATACCTTCCTTGTCCTGAA 256852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 502949782656880
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