Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_026923.1
Length=179110
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 318 7e-82
seq8546 199 5e-46
seq25216 179 4e-40
seq29420 163 3e-35
seq3927 163 3e-35
seq59 152 6e-32
seq9720 93.3 5e-14
seq8630 93.3 5e-14
>seq5412
Length=31808
Score = 318 bits (352), Expect = 7e-82
Identities = 487/692 (70%), Gaps = 8/692 (1%)
Strand=Plus/Minus
Query 157722 GGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCC 157780
|||| || || ||||||||||||| || | | ||||| ||| || || || | |||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225
Query 157781 TTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTC 157840
||| | |||||||| || || || ||||| || || || ||||| ||| ||| || ||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 157841 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTC 157900
| || || ||||| || ||||||||||| || ||| | || || || ||| |
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 157901 CACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCT 157960
||||| || || || |||||||| |||||| |||| || ||| | || || ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 157961 TTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGG 158020
| | || | || || |||||| | | || | | || ||||| |||||||||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 158021 GAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTC 158080
||||| || |||| | ||||||||||| ||||| ||| || ||||| || || ||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 158081 GCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCT 158140
|| | || | ||| || ||| | |||| || | ||| |||| || || ||| |
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 158141 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAC 158200
|||||||| || || ||||||||||| |||| |||| |||||||||| || || ||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 158201 ATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTC 158260
|||||||||||||| || || ||| | || || ||||| ||||||| || | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 158261 TCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAG 158320
| |||||| | | || || || | | | ||||| || |||| ||
Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 158321 TCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCC 158380
|| || | ||||| | | | |||||||| |||||||| || || ||||| || ||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 158381 CATGGCTACTTCGGTCGTTTGATCTTCCAATA 158412
||||| || || || || || |||||||||||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599
Score = 102 bits (112), Expect = 9e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 158526 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 158585
|||| |||||||| || | ||||| |||| |||||||| | || || ||||| |||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 158586 TACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 158645
| | |||||| || ||||||||||||||||||||||| ||||| || | |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 158646 CACTGGATCTTGCTGC 158661
| || || || || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 199 bits (220), Expect = 5e-46
Identities = 313/445 (70%), Gaps = 6/445 (1%)
Strand=Plus/Minus
Query 158219 CATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGT 158278
|| ||| | || || ||||| |||||||| || || | ||| || ||||||||| |
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 158279 CTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTA 158337
| || || || | | | || | ||||| || |||| | || || | |||||
Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086
Query 158338 TAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCG 158397
| || |||||||| || || || | || || || || || ||||| || || || ||
Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026
Query 158398 TTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGC 158457
|| ||||||||||| ||| |||||| | || | ||| || || |||||| | | |||
Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966
Query 158458 ATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCT 158517
|||||||| || || || ||||| || | | || | || |||||||| | |||
Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906
Query 158518 GAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTG 158577
||||| ||||| |||||||| || | ||||| |||| |||||||| || ||
Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTG 12850
Query 158578 GGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACA 158637
||| ||| | | ||||||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790
Query 158638 CAACTTCCCACTGGATCTTGCTGCT 158662
||||||| || || || ||||||
Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765
>seq25216
Length=8180
Score = 179 bits (198), Expect = 4e-40
Identities = 183/239 (77%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 158036 TTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCA 158095
|| ||||||||||| ||||| | | || ||||| ||||| || || || || | |||
Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197
Query 158096 GTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 158155
|| ||| | |||| || | |||||||| || || |||| ||||||||| || ||
Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137
Query 158156 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCG 158215
||||||||||| |||| |||| |||||||||| | || ||||||||||||||||||||
Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077
Query 158216 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274
|| || ||| | || || | ||| |||||||| || || || ||| ||||||||||||
Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018
>seq29420
Length=7120
Score = 163 bits (180), Expect = 3e-35
Identities = 252/360 (70%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 157789 TGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGG 157848
|||||| || || || ||||| || || || ||||| ||| |||| || || | | ||
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474
Query 157849 TAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTA 157908
||||| || |||||||||| || |||| | ||| || || ||| | ||||| ||
Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534
Query 157909 CCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 157968
|| || |||||||| |||||| |||| || ||| | || || |||||||||| | ||
Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594
Query 157969 TGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTC 158028
|| || |||||| | | || | | || ||||| ||||||||||||||
Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654
Query 158029 TTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGC 158088
|| |||| | ||||||||||| ||||| ||| || ||||| | ||| || || || ||
Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714
Query 158089 GAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCT 158148
| | | | ||| | |||| || | |||||||| || || |||| |||||||||
Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq3927
Length=49767
Score = 163 bits (180), Expect = 3e-35
Identities = 186/246 (76%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 159667 TGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTT 159726
||| | |||||||||||||| || || || | || |||||||||||| |||| ||||||
Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066
Query 159727 GAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 159785
||| ||||||| ||| ||| | || ||||| ||||| || || || | |||||| ||
Sbjct 26067 GAACTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125
Query 159786 TGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGC 159845
||| ||||||| || || || || |||||||| ||||||||| |||||||||||
Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185
Query 159846 ACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAA 159905
|||||||| || |||||| | || || ||||| | | || |||| || || || ||
Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTAT-ATTCGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244
Query 159906 CTGGAC 159911
|||||
Sbjct 26245 TTGGAC 26250
>seq59
Length=339703
Score = 152 bits (168), Expect = 6e-32
Identities = 188/257 (73%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 158129 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158188
|| || |||| ||||||||| || | ||||||||||| |||| |||| ||||||||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 158189 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158248
|| || |||||||||||||||||||| || || ||| | | || ||||| ||||||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 158249 GGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACG 158308
|| || || ||| || ||||||||| | | || || || | || | |||||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 158309 ACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAAC 158368
|| |||| || || || | ||||| | ||| |||||||| |||||||| || ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 158369 ATCGTTGCAGCCCATGG 158385
|| || || | |||||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
>seq9720
Length=70212
Score = 93.3 bits (102), Expect = 5e-14
Identities = 139/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 159608 TACTTTGGGGTCCTGAGTCTC-AAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATT 159666
|||| ||||| || | ||| |||| || || || ||||| ||| | || || ||
Sbjct 67922 TACTATGGGGCACTAAAGCTCTAAGGAGATTTTATTCGTTGGTGTCAATTAGGCGGCATG 67981
Query 159667 TGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTT 159726
||| | ||||||||||| || | || |||| || ||| |||||||| |||| |||||
Sbjct 67982 TGGACTTTTGTTGCTCTTCATGACGCTTTCGGACTAATATGTTTTATGTTACGTCAATTC 68041
Query 159727 GAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 159785
||| ||| ||| ||| ||| | || | ||| ||||| || || |||||||| || ||
Sbjct 68042 GAACTTGTTCGATCT-GTTCAATTGCGACTTTATAATGCAATCGCATTCTCTGGCCCAAT 68100
Query 159786 TGCTGTTTTTGT 159797
||| |||||||
Sbjct 68101 TGC-CTTTTTGT 68111
>seq8630
Length=23577
Score = 93.3 bits (102), Expect = 5e-14
Identities = 101/133 (76%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTT-GCAGCCCATGGCTACTT 158391
||||| || || |||||||| || || || || || ||||| || || ||||| || ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 158392 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 158451
||||| || ||||||||||| ||| |||||||| || ||||| || || ||||| |
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616
Query 158452 TGCTGCATGGCCT 158464
|| || ||||||
Sbjct 7617 AGCCGCTTGGCCT 7629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570247741696800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |