Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq5412 318 7e-82 seq8546 199 5e-46 seq25216 179 4e-40 seq29420 163 3e-35 seq3927 163 3e-35 seq59 152 6e-32 seq9720 93.3 5e-14 seq8630 93.3 5e-14 >seq5412 Length=31808 Score = 318 bits (352), Expect = 7e-82 Identities = 487/692 (70%), Gaps = 8/692 (1%) Strand=Plus/Minus Query 157722 GGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCC 157780 |||| || || ||||||||||||| || | | ||||| ||| || || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 157781 TTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTC 157840 ||| | |||||||| || || || ||||| || || || ||||| ||| ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 157841 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTC 157900 | || || ||||| || ||||||||||| || ||| | || || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 157901 CACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCT 157960 ||||| || || || |||||||| |||||| |||| || ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 157961 TTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGG 158020 | | || | || || |||||| | | || | | || ||||| ||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 158021 GAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTC 158080 ||||| || |||| | ||||||||||| ||||| ||| || ||||| || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 158081 GCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCT 158140 || | || | ||| || ||| | |||| || | ||| |||| || || ||| | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 158141 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAC 158200 |||||||| || || ||||||||||| |||| |||| |||||||||| || || |||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 158201 ATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTC 158260 |||||||||||||| || || ||| | || || ||||| ||||||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 158261 TCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAG 158320 | |||||| | | || || || | | | ||||| || |||| || Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 158321 TCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCC 158380 || || | ||||| | | | |||||||| |||||||| || || ||||| || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 158381 CATGGCTACTTCGGTCGTTTGATCTTCCAATA 158412 ||||| || || || || || ||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 158526 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 158585 |||| |||||||| || | ||||| |||| |||||||| | || || ||||| ||| Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 158586 TACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 158645 | | |||||| || ||||||||||||||||||||||| ||||| || | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 158646 CACTGGATCTTGCTGC 158661 | || || || || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 199 bits (220), Expect = 5e-46 Identities = 313/445 (70%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 158219 CATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGT 158278 || ||| | || || ||||| |||||||| || || | ||| || ||||||||| | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 158279 CTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTA 158337 | || || || | | | || | ||||| || |||| | || || | ||||| Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086 Query 158338 TAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCG 158397 | || |||||||| || || || | || || || || || ||||| || || || || Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 158398 TTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGC 158457 || ||||||||||| ||| |||||| | || | ||| || || |||||| | | ||| Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 158458 ATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCT 158517 |||||||| || || || ||||| || | | || | || |||||||| | ||| Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 158518 GAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTG 158577 ||||| ||||| |||||||| || | ||||| |||| |||||||| || || Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTG 12850 Query 158578 GGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACA 158637 ||| ||| | | ||||||||| ||||||||||||||||||||||| ||||| || || Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 158638 CAACTTCCCACTGGATCTTGCTGCT 158662 ||||||| || || || |||||| Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 179 bits (198), Expect = 4e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 158036 TTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCA 158095 || ||||||||||| ||||| | | || ||||| ||||| || || || || | ||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 158096 GTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 158155 || ||| | |||| || | |||||||| || || |||| ||||||||| || || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 158156 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCG 158215 ||||||||||| |||| |||| |||||||||| | || |||||||||||||||||||| Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 158216 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 || || ||| | || || | ||| |||||||| || || || ||| |||||||||||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 >seq29420 Length=7120 Score = 163 bits (180), Expect = 3e-35 Identities = 252/360 (70%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 157789 TGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGG 157848 |||||| || || || ||||| || || || ||||| ||| |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 157849 TAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTA 157908 ||||| || |||||||||| || |||| | ||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 157909 CCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 157968 || || |||||||| |||||| |||| || ||| | || || |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 157969 TGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTC 158028 || || |||||| | | || | | || ||||| |||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 158029 TTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGC 158088 || |||| | ||||||||||| ||||| ||| || ||||| | ||| || || || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 158089 GAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCT 158148 | | | | ||| | |||| || | |||||||| || || |||| ||||||||| Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq3927 Length=49767 Score = 163 bits (180), Expect = 3e-35 Identities = 186/246 (76%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 159667 TGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTT 159726 ||| | |||||||||||||| || || || | || |||||||||||| |||| |||||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 159727 GAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 159785 ||| ||||||| ||| ||| | || ||||| ||||| || || || | |||||| || Sbjct 26067 GAACTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125 Query 159786 TGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGC 159845 ||| ||||||| || || || || |||||||| ||||||||| ||||||||||| Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185 Query 159846 ACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAA 159905 |||||||| || |||||| | || || ||||| | | || |||| || || || || Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTAT-ATTCGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244 Query 159906 CTGGAC 159911 ||||| Sbjct 26245 TTGGAC 26250 >seq59 Length=339703 Score = 152 bits (168), Expect = 6e-32 Identities = 188/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 158129 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158188 || || |||| ||||||||| || | ||||||||||| |||| |||| |||||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 158189 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158248 || || |||||||||||||||||||| || || ||| | | || ||||| |||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 158249 GGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACG 158308 || || || ||| || ||||||||| | | || || || | || | ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 158309 ACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAAC 158368 || |||| || || || | ||||| | ||| |||||||| |||||||| || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 158369 ATCGTTGCAGCCCATGG 158385 || || || | ||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq9720 Length=70212 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 159608 TACTTTGGGGTCCTGAGTCTC-AAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATT 159666 |||| ||||| || | ||| |||| || || || ||||| ||| | || || || Sbjct 67922 TACTATGGGGCACTAAAGCTCTAAGGAGATTTTATTCGTTGGTGTCAATTAGGCGGCATG 67981 Query 159667 TGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTT 159726 ||| | ||||||||||| || | || |||| || ||| |||||||| |||| ||||| Sbjct 67982 TGGACTTTTGTTGCTCTTCATGACGCTTTCGGACTAATATGTTTTATGTTACGTCAATTC 68041 Query 159727 GAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 159785 ||| ||| ||| ||| ||| | || | ||| ||||| || || |||||||| || || Sbjct 68042 GAACTTGTTCGATCT-GTTCAATTGCGACTTTATAATGCAATCGCATTCTCTGGCCCAAT 68100 Query 159786 TGCTGTTTTTGT 159797 ||| ||||||| Sbjct 68101 TGC-CTTTTTGT 68111 >seq8630 Length=23577 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/133 (76%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTT-GCAGCCCATGGCTACTT 158391 ||||| || || |||||||| || || || || || ||||| || || ||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 158392 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 158451 ||||| || ||||||||||| ||| |||||||| || ||||| || || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 158452 TGCTGCATGGCCT 158464 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570247741696800