Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq5412 329 4e-85 seq8546 232 7e-56 seq25216 170 2e-37 seq29420 163 3e-35 seq59 152 6e-32 seq2610 113 5e-20 seq8630 102 9e-17 seq78858 89.7 6e-13 seq4835 82.4 8e-11 >seq5412 Length=31808 Score = 329 bits (364), Expect = 4e-85 Identities = 490/693 (71%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 160006 GGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCC 160064 |||| ||||| |||||||||| || | ||| | ||||| ||| || || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 160065 TTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTC 160124 ||| | |||||||| || || || || || || || |||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 160125 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTT 160184 | || || ||||| || ||||||||||| || ||| ||| || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 160185 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 160244 ||||| ||||| || |||||||| ||||| ||||||| ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 160245 TTCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGG 160304 | | || | || ||||||||| | | || | | || ||||| ||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 160305 GAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTC 160364 |||||| | |||| | ||||||||||| ||||| ||| || ||||| || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 160365 GCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCT 160424 || | || ||||||| ||| | | || || | ||| |||| || || ||| | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 160425 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAT 160484 |||||||| || || ||||||||||| |||| |||| |||||||||| || || ||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 160485 ATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTC 160544 ||||||||||| || || |||||| | ||||| ||||| ||||||| || | | ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 160545 TCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAG 160604 | ||| || | | || || || | | | ||||| || |||| || Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 160605 TCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCC 160664 || || | ||||| | | | ||||||||||||||||| || || ||||| || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 160665 CATGGTTACTTCGGTCGTTTGATCTTCCAATAT 160697 |||||||| || || || || |||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 160810 TCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACG 160869 |||| |||||||| || | | ||| |||||||||||||| | || || ||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 160870 TACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 160929 | | || || || ||||||||||||||||||||||| ||||| || | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 160930 CACTCGACCTCGCTGC 160945 | |||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 232 bits (256), Expect = 7e-56 Identities = 320/445 (72%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 160503 CACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGT 160562 |||||| | ||||| ||||| |||||||| || || | ||| || |||||| || | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 160563 CTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTA 160621 | || || || | | | || | ||||| || |||| | || || | ||||| Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086 Query 160622 TAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCG 160681 | || ||||||||||| || || | || || || || || |||||||| || || || Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 160682 TTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGC 160741 || |||||||||||||| |||||| | || | ||| | || |||||| | | || Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 160742 ATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCT 160801 ||||||||||| || || ||||| ||| || | ||| |||| || |||||||| | ||| Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 160802 CAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTG 160861 ||||| ||||| |||||||| || | | ||| |||||||||||||| | | || Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA----TTG 12850 Query 160862 GGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACA 160921 ||| || | | || || ||| ||||||||||||||||||||||| ||||| || || Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 160922 CAACTTCCCACTCGACCTCGCTGCT 160946 ||||||| || ||||| |||||| Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 170 bits (188), Expect = 2e-37 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 160320 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCT 160379 || ||||||||||| ||||| | | || ||||| ||||| || || || || ||||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 160380 GTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 160439 || ||| | | || || | |||||||| || || |||| ||||||||| || || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 160440 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 160499 ||||||||||| |||| |||| |||||||||| | || ||||| ||||||||||| || Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 160500 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 160558 || |||||| | ||||| | ||| |||||||| || || | ||| ||||||||| || Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 >seq29420 Length=7120 Score = 163 bits (180), Expect = 3e-35 Identities = 252/360 (70%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 160073 TGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGG 160132 |||||| || || || || || || || |||||||| || |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 160133 TAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTA 160192 ||||| || |||||||||| || |||| |||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 160193 TCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 160252 ||| || |||||||| ||||| ||||||| ||| | || || |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 160253 CGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTC 160312 || || |||||| | | || | | || ||||| ||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 160313 ATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGC 160372 | |||| | ||||||||||| ||||| ||| || ||||| | ||| || || || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 160373 ATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCT 160432 || || | ||| | | || || | |||||||| || || |||| ||||||||| Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq59 Length=339703 Score = 152 bits (168), Expect = 6e-32 Identities = 189/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 160413 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 160472 || || |||| ||||||||| || | ||||||||||| |||| |||| |||||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 160473 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 160532 || || ||||| ||||||||||| || || |||||| | |||| ||||| |||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 160533 GGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACG 160592 || || | ||| || |||||| || | | || || || | || | ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 160593 ACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAAC 160652 || |||| || || || | ||||| | ||| ||||||||||||||||| || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 160653 ATCGTCGCAGCCCATGGTT 160671 || || || | ||||||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq2610 Length=55653 Score = 113 bits (124), Expect = 5e-20 Identities = 163/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || || |||| || | || || | ||| || || || || || |||||| Sbjct 39278 TACATCTTGGACTCAGCTGAGAATGCTGGCTTGGATCTTCCATACTCGTGCCGAGCTGGT 39337 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 ||||| || ||||||| || || | ||||| || |||| |||||||| ||| |||| Sbjct 39338 GCTTGTTCAACCTGTGCTGGGAAGCTGATTTCTGGATCAGTCGACCAGTCAGACGGGTCC 39397 Query 161246 TTCTTGGATGATGACCAGATTGAATC-TGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 ||| | ||||||||||| ||| |||| || | | | |||| || || || || ||||| Sbjct 39398 TTCCTTGATGATGACCAAATT-AATCAGGGCTACGTACTGACTTGCGTCGCGTACCCTAC 39456 Query 161305 TAGCGATTGTGTGATTCAAACTGAGCAAG-AGGAGAATCTGTACT 161348 | |||||||||||||| ||| | ||| ||| ||| || |||| Sbjct 39457 CGGAGATTGTGTGATTCATACTCACAAAGAAGGTGAA-CTCTACT 39500 >seq8630 Length=23577 Score = 102 bits (112), Expect = 9e-17 Identities = 103/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGT-CGCAGCCCATGGTTACTT 160675 ||||| || || ||||||||||| || || || || ||||| ||| || |||||||| || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 160676 CGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCT 160735 ||||| || |||||||||||||| |||||||| || ||||| | || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 160736 GGCAGCATGGCCT 160748 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 >seq78858 Length=18568 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| |||||||||||||| || | ||| || Sbjct 917 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTCGG-TTGTCCGGT 975 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||| ||| | ||| | || |||||| |||| || |||| || Sbjct 976 CTATTGCTCTTTCCGTGTGCGTATTTCGCTGTAGGAGGTTGGTTTACGGGTTCAACCTTT 1035 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 161866 | ||| ||||||||| |||||| | || ||||||||| | | ||| ||||| ||||| Sbjct 1036 GTAACTTCCTGGTATACTCATGGTTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCT 1093 Query 161867 TA 161868 || Sbjct 1094 TA 1095 >seq4835 Length=43218 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||| | || ||||||||||| || || || || ||||| || || |||||||| || Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTC----ACTTCACTTCTT 160732 || | || |||||||||||||| |||||||| || ||||| | | || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 160733 CCTGGCAGCATGGCCT 160748 | || || |||||| Sbjct 9179 ATTAGCCGCTTGGCCT 9194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556793245082800