Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq5412 295 1e-74 seq8546 192 9e-44 seq29420 147 3e-30 seq25216 125 1e-23 seq2357 116 5e-21 seq59 113 7e-20 seq3927 111 2e-19 seq6909 104 3e-17 seq8630 95.1 2e-14 >seq5412 Length=31808 Score = 295 bits (326), Expect = 1e-74 Identities = 482/692 (70%), Gaps = 8/692 (1%) Strand=Plus/Minus Query 174514 GGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTCATTATCGCT 174572 |||| || ||| | ||||||||||| || || ||||||| | || || ||||| || Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACA-TCCGTATTTATTATAGCC 15225 Query 174573 TTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTC 174632 ||| | | |||||| || || || || || || || |||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 174633 ATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTA 174692 | || |||||||| || ||||||||||| || ||| | || || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 174693 CACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCT 174752 ||||| || ||||| |||||||| || | | || |||||| | ||||| |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 174753 TTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGG 174812 | | ||| |||| || |||||| | ||||| | || ||||| ||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 174813 GAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTT 174872 ||||| || ||| | |||||| | |||||||| ||| || || || || || ||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 174873 GCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCG 174932 || | ||| | || || ||| | |||| || | ||| |||| || || | | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 174933 ATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAAC 174992 ||||| | || || ||||| || ||||||| |||| | || ||||| || || || ||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 174993 ATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTC 175052 ||| | |||||||| || |||||||| || || || ||||| |||| || | | ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 175053 TCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAG 175112 | ||||||||| | || ||||| | || | || || || |||| ||| Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 175113 TCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCC 175172 || || | ||||||| | | || ||||| |||||||| ||||| ||||| || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 175173 CATGGCTACTTCGGTCGTTTGATCTTCCAATA 175204 ||||| || || || || || ||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 >seq8546 Length=31398 Score = 192 bits (212), Expect = 9e-44 Identities = 303/434 (70%), Gaps = 4/434 (1%) Strand=Plus/Minus Query 175011 CACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCA 175070 |||||||| || || || ||||| ||||| || || | ||| | ||||||||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 175071 CTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTAC 175130 | || |||||| | || | || || || |||| | | || || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 175131 AAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGT 175190 | || || ||||| || || || | || || || || || ||||| || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 175191 TTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCA 175250 || ||||||||||| ||| |||||| | || | || | || |||||||||| || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 175251 TGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTC 175310 ||||| || || ||||| ||||| || | | ||| || || |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 175311 AATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGG 175370 || || ||||| |||||||| ||||| | || | |||||| | ||| | | ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA----TTGG 12849 Query 175371 GCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACAC 175430 || ||| || ||||| | ||| ||||| |||||||| |||||||| | ||||| || Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 175431 AACTTCCCACTAGA 175444 ||||||| ||||| Sbjct 12788 AACTTCCATCTAGA 12775 >seq29420 Length=7120 Score = 147 bits (162), Expect = 3e-30 Identities = 234/336 (70%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 174581 TGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGG 174640 |||||| || || || || || || || |||||||| || |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 174641 AAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTCTA 174700 |||||| || |||||||||| || |||| | ||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 174701 CCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAACT 174760 ||||| |||||||| || | | || |||||| | ||||| |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 174761 AGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACTCTC 174820 | ||| || |||||| | ||||| | || ||||| |||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 174821 TTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGC 174880 || ||| | |||||| | |||||||| ||| || || || | || ||||| || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 174881 TTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGG 174916 | | | | ||| | |||| || | |||||||| Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGG 3750 >seq25216 Length=8180 Score = 125 bits (138), Expect = 1e-23 Identities = 180/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 174828 TTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCA 174887 || |||||| | |||||||| | | || || || || || ||||| || ||| | || Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 174888 GTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATC 174947 || ||| | |||| || | |||||||| || || || | ||||| | || || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 174948 TCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCC 175007 ||||| || ||||||| |||| | || ||||| | || || |||||| | |||||||| Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 175008 TTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGT 175067 || |||||||| || || | ||||| ||||| || || | ||| || ||||||||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017 Query 175068 TCACTTGTTACCTC 175081 || | || ||||| Sbjct 7016 TCTTTGGTAACCTC 7003 >seq2357 Length=57658 Score = 116 bits (128), Expect = 5e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 161473 TGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGAT 161532 ||||||||| |||||||||||||| || ||| |||| |||| || || ||||| ||||| Sbjct 45931 TGGTATTCTGTTCAACCATGAGTCTCCTCGAAGGGGAGAGAACTTTGTGACCCGAAAGAT 45990 Query 161533 TACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCT 161592 || || | | || | | || | || || || ||| | || | ||| || || || Sbjct 45991 CACGAGAGCAGTAGGCAGGATCAAGACCGGTCTGCAGAACAAGCTCTTCCTTGGAAACCT 46050 Query 161593 AAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTT 161652 | | | | |||||||| ||| | ||||||||||||||| |||||| ||||| | Sbjct 46051 TCAGGCTTCAAGGGATTGGGGATTTGCAGGAGACTATGTGGAGGCAATGTGGATGATGCT 46110 Query 161653 ACAACAGGAAACTCCTGATGACTATGT 161679 |||||||| | || ||||||||||| Sbjct 46111 TCAACAGGACAAGCCAGATGACTATGT 46137 >seq59 Length=339703 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 174948 TCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCC 175007 ||||| || ||||||| |||| | || ||||| || || || |||||| | |||||||| Sbjct 52336 TCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGAGCACAACATCCTTATGCACCCA 52395 Query 175008 TTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGT 175067 || |||||||| | || || ||||| ||||| || || | ||| | ||||||||| Sbjct 52396 TTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGTTATGCATGGT 52455 Query 175068 TCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGT 175127 || | || ||||| | | | || || || |||| ||| || || | ||| Sbjct 52456 TCTTTGGTAACCTCGAGTTTGATTAGGGAAACCACAGAAAATGAATCTACTAATGAAGGT 52515 Query 175128 TACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGG 175177 |||| ||| || ||||| |||||||| ||||| || || || | ||||| Sbjct 52516 TACAGGTTTGGTCAAGAGGAAGAGACTTATAATATTGTAGCTACTCATGG 52565 >seq3927 Length=49767 Score = 111 bits (122), Expect = 2e-19 Identities = 176/251 (70%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 176139 TGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTT 176198 ||| | |||||||||||||| || || || | || || || || ||| | ||||| ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 176199 GAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATC 176258 ||||| || || || | || || || || || || ||||| |||||| || Sbjct 26067 GAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAATT 26126 Query 176259 GCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCC 176318 || | ||||| |||||||| | || ||||||||||| ||| ||||||||||| Sbjct 26127 GCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 26186 Query 176319 CCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAAC 176378 || |||||||| ||| | || || ||||| | | ||| |||| || || || || Sbjct 26187 CCTAGTTTTGGTGTAGCATCTAT-ATTCGATTCATCCTCTTTTTTCAAGGGTTTCATAAT 26245 Query 176379 TGGACACTGAA 176389 |||||| |||| Sbjct 26246 TGGACATTGAA 26256 >seq6909 Length=27413 Score = 104 bits (114), Expect = 3e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 161473 TGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGAT 161532 ||| ||||| |||||||| ||||| || ||| |||| |||| || || ||||| ||||| Sbjct 25572 TGGCATTCTGTTCAACCACGAGTCTCCTCGAAGGGGAGAGAACTTTGTGACCCGAAAGAT 25631 Query 161533 TACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCT 161592 || || | | || | | || | || || |||||| || | ||| || || || Sbjct 25632 CACAAGAGCAGTAGGCAGGATCAAGACCGGTCTACAGACCAAGCTCTTCCTCGGAAACCT 25691 Query 161593 AAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTT 161652 | | | | ||||||||| ||| | ||||||||| ||||| |||||| ||||| | Sbjct 25692 TCAGGCTTCAAGGGATTGGGGTTTTGCAGGAGACTATGTTGAGGCAATGTGGATGATGCT 25751 Query 161653 ACAACAGGAAACTCCTGATGACTATGT 161679 ||||| || | || ||||||||||| Sbjct 25752 TCAACAAGACAAGCCAGATGACTATGT 25778 >seq8630 Length=23577 Score = 95.1 bits (104), Expect = 2e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 175125 GGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTG-GCAGCCCATGGCTACTT 175183 |||||||| || || ||||| || || || || || ||||| || || ||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 175184 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTT 175243 ||||| || ||||||||||| ||| |||||||| || || || | || ||||| || Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 175244 AGCCGCATGGCC 175255 |||||| ||||| Sbjct 7617 AGCCGCTTGGCC 7628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 726393145832720