Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq5412 351 1e-91 seq8546 185 1e-41 seq25216 183 4e-41 seq29420 167 3e-36 seq59 167 3e-36 seq3927 102 1e-16 seq8630 87.8 2e-12 >seq5412 Length=31808 Score = 351 bits (388), Expect = 1e-91 Identities = 495/693 (71%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 177895 GGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCC 177953 |||| ||||| |||||||||| || | ||| | ||||| ||| || || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 177954 TTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTC 178013 ||| | |||||||| || || || || || || || |||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 178014 ATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTT 178073 | || || ||||| || ||||||||||| || ||| ||| || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 178074 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 178133 ||||| ||||| || |||||||| ||||| ||||||| ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 178134 TTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGG 178193 | | || | || ||||||||| | ||||| | | |||||||| ||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 178194 GAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTA 178253 |||||| | |||| | ||||||||||| ||||| ||| || || || || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 178254 GCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCA 178313 || | || | || || ||| || |||| || | ||| |||| |||||| | | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373 ||||| || || || |||||||| ||||||| |||| |||| ||||| || || |||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTC 178433 || || |||||||| || |||||||| || || || |||||||||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 178434 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAA 178493 || ||| ||||||||||| || || | | | ||||| || |||| ||| Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 178494 TCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCA 178553 || || | ||||| | | | || ||||| |||||||| || || ||||| || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 178554 CATGGCTACTTCGGTCGTTTGATCTTCCAATAT 178586 ||||| || || || || || |||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 >seq8546 Length=31398 Score = 185 bits (204), Expect = 1e-41 Identities = 307/443 (69%), Gaps = 4/443 (1%) Strand=Plus/Minus Query 178392 CACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCT 178451 |||||||| || || || ||||||||||| || || | ||||||| ||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 178452 TTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTAT 178511 ||||| || ||| | | | ||||| || |||| |||| || | ||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 178512 AAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGT 178571 | || || ||||| || || || | || || || || || ||||| || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 178572 TTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCA 178631 || ||||||||||||||| |||||| | || | ||| | || |||||| | | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 178632 TGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTC 178691 ||||||||||| || || ||||| || | | || | || || |||||||||| ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 178692 AATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGG 178751 || || ||||| |||||||| || | | || | ||||| ||||| || ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849 Query 178752 GCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCAC 178811 || || | | ||||| || || || |||||||| ||||| || || || || || Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 178812 AACTTCCCGCTTGATCTTGCAGC 178834 ||||||| || || || || || Sbjct 12788 AACTTCCATCTAGACCTAGCTGC 12766 >seq25216 Length=8180 Score = 183 bits (202), Expect = 4e-41 Identities = 193/254 (76%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 178209 TTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCA 178268 || ||||||||||| ||||| | | || || || ||||| || || || || | || Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 178269 GTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATC 178328 || ||| || |||| || | |||||||| |||||||| | ||||| || || || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 178329 TCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCC 178388 |||||||| ||||||| |||| |||| ||||| | || |||||||| || |||||||| Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 178389 TTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGT 178448 || |||||||| || || | ||||||||||| || || || |||||||| ||||| ||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017 Query 178449 TCTTTGGTTACATC 178462 |||||||| || || Sbjct 7016 TCTTTGGTAACCTC 7003 >seq29420 Length=7120 Score = 167 bits (184), Expect = 3e-36 Identities = 253/360 (70%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 177962 TGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGG 178021 |||||| || || || || || || || |||||||| || |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 178022 CAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTA 178081 ||||| || |||||||||| || |||| |||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 178082 TCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 178141 ||| || |||||||| ||||| ||||||| ||| | || || |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 178142 CGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTC 178201 || || |||||| | ||||| | | |||||||| ||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 178202 ATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGC 178261 | |||| | ||||||||||| ||||| ||| || || || | ||| || || || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 178262 ATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACT 178321 | | | ||| || |||| || | |||||||| |||||||| | ||||| || Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq59 Length=339703 Score = 167 bits (184), Expect = 3e-36 Identities = 191/257 (74%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 178302 TTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAA 178361 |||||||| | ||||| || || | |||||||| ||||||| |||| |||| ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 178362 GCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGT 178421 || || |||||||| || |||||||| || |||||||| | || || ||||||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 178422 GGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACG 178481 || || || ||||||| ||||| ||||||||||| || || | || | ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 178482 ACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAAC 178541 || |||| ||||| || | ||||| | ||| || ||||| |||||||| || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 178542 ATCGTTGCAGCACATGG 178558 || || || | ||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq3927 Length=49767 Score = 102 bits (112), Expect = 1e-16 Identities = 175/248 (71%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 179511 TGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTT 179570 |||| ||| || |||||||| || || || | || || ||||| ||| | | |||||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 179571 GAACTTGCTCG-CCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTAT 179629 ||||||||||| ||| || | ||||||| ||||| || || || | |||||| || Sbjct 26067 GAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125 Query 179630 TGCTGTATTCG--TCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTC 179687 ||| | || | || |||||| || || ||||| | || ||||| |||||| || Sbjct 26126 TGCCATTTTTGTTTCGGTGTTT--CTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTT 26183 Query 179688 GCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCAC 179747 ||||| |||||||| || | || ||| | ||| | || || |||| || || || Sbjct 26184 GCGCCTAGTTTTGGTGTAGCATCTATATTC-GATTCATCCTCTTTTTTCAAGGGTTTCAT 26242 Query 179748 AACTGGAC 179755 || ||||| Sbjct 26243 AATTGGAC 26250 >seq8630 Length=23577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTT-GCAGCACATGGCTACTT 178564 ||||| || || || ||||| || || || || || ||||| || || ||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 178565 CGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCT 178624 ||||| || ||||||||||||||| |||||||| || ||||| | || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 178625 CGCAGCATGGCCT 178637 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603073528938720