Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq5412 327 1e-84 seq8546 205 1e-47 seq25216 179 4e-40 seq59 161 1e-34 seq29420 149 7e-31 seq8630 111 2e-19 seq4835 87.8 2e-12 seq78858 84.2 2e-11 >seq5412 Length=31808 Score = 327 bits (362), Expect = 1e-84 Identities = 489/692 (71%), Gaps = 8/692 (1%) Strand=Plus/Minus Query 158425 GGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCC 158483 |||| ||||| |||||||||| || | ||| | ||||| ||| || || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 158484 TTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTC 158543 ||| | |||||||| || || || || || || || |||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 158544 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTT 158603 | || || ||||| || ||||||||||| || | | ||| || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 158604 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 158663 ||||| ||||| || |||||||| ||||| ||||||| ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 158664 TTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGG 158723 | | || | || ||||||||| | | || | | || ||||| ||||| ||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 158724 GAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTC 158783 |||||| | ||| | ||||||||||| ||||| ||| || ||||| || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 158784 GCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCT 158843 || | || ||||||| ||| | |||| || | ||| |||| || || ||| | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 158844 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAC 158903 |||||||| || || ||||||||||| |||| |||| |||||||||| || || |||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 158904 ATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTC 158963 |||||||||||||| || || ||| | || || ||||| ||||||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 158964 TCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAG 159023 | |||||| | | || || || | | | ||||| || |||| || Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 159024 TCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCC 159083 || || | ||||||| | | || ||||| ||||| || ||||||||||| || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 159084 CATGGTTACTTCGGTCGTTTGATCTTCCAATA 159115 |||||||| || || || || ||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 159229 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 159288 |||| |||||||| || | ||||| |||| |||||||| | || || ||||| ||| Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 159289 TACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 159348 | | ||||| | || |||||||||||||||||||| ||||| || | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 159349 CACTCGACCTTGCTGC 159364 | |||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 205 bits (226), Expect = 1e-47 Identities = 314/445 (71%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 158922 CATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGT 158981 || ||| | || || ||||| |||||||| || || | ||| || ||||||||| | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 158982 CTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTA 159040 | || || || | | | || | ||||| || |||| | || || | ||||| Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086 Query 159041 CAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCG 159100 || || || ||||| || ||||| | ||||| || || || |||||||| || || || Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 159101 TTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGC 159160 || ||||||||||| ||| |||||| | || | ||| || || |||||| | | ||| Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 159161 ATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCT 159220 |||||||| || || || ||||| || | | || | || |||||||| | ||| Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 159221 GAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTG 159280 ||||| ||||| |||||||| || | ||||| |||| |||||||| || || Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTG 12850 Query 159281 GGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACA 159340 ||| ||| | | ||||| || || |||||||||||||||||||| ||||| || || Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 159341 CAACTTCCCACTCGACCTTGCTGCT 159365 ||||||| || ||||| |||||| Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 179 bits (198), Expect = 4e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 158739 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCT 158798 || ||||||||||| ||||| | | || ||||| || || || || || || ||||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 158799 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 158858 || ||| | |||| || | |||||||| || || |||| ||||||||| || || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 158859 TCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCG 158918 ||||||||||| |||| |||| |||||||||| | || |||||||||||||||||||| Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 158919 TTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 || || ||| | || || | ||| |||||||| || || || ||| |||||||||||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 >seq59 Length=339703 Score = 161 bits (178), Expect = 1e-34 Identities = 191/259 (74%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 158832 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158891 || || |||| ||||||||| || | ||||||||||| |||| |||| |||||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 158892 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158951 || || |||||||||||||||||||| || || ||| | | || ||||| |||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 158952 GGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACG 159011 || || || ||| || ||||||||| | | || || || | || | ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 159012 ACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAAT 159071 || |||| || || || | ||||||| ||| || ||||| ||||| || |||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 159072 ATCGTCGCAGCCCATGGTT 159090 || || || | ||||||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq29420 Length=7120 Score = 149 bits (164), Expect = 7e-31 Identities = 249/360 (69%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 158492 TGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGG 158551 |||||| || || || || || || || |||||||| || |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 158552 TAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTA 158611 ||||| || |||||||||| || | || |||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 158612 TCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 158671 ||| || |||||||| ||||| ||||||| ||| | || || |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 158672 CGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTC 158731 || || |||||| | | || | | || ||||| ||||| ||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 158732 ATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGC 158791 | ||| | ||||||||||| ||||| ||| || ||||| | || || || || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 158792 ATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCT 158851 || || | ||| | |||| || | |||||||| || || |||| ||||||||| Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq8630 Length=23577 Score = 111 bits (122), Expect = 2e-19 Identities = 105/133 (79%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGT-CGCAGCCCATGGTTACTT 159094 |||||||| || || ||||| || ||||| || |||||||| ||| || |||||||| || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 159095 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 159154 ||||| || ||||||||||| ||| |||||||| || ||||| || || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 159155 TGCTGCATGGCCT 159167 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 >seq4835 Length=43218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095 ||||||| || || ||||| || ||||| || |||||||| || || |||||||| || Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTC----CTTGCACTTCTT 159151 || | || ||||||||||| ||| |||||||| || ||||| || || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 159152 CCTTGCTGCATGGCCT 159167 | || || |||||| Sbjct 9179 ATTAGCCGCTTGGCCT 9194 >seq78858 Length=18568 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| |||||||||||||| || | ||| || Sbjct 917 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTCGG-TTGTCCGGT 975 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||| ||| | ||| | || |||||| |||| || |||| || Sbjct 976 CTATTGCTCTTTCCGTGTGCGTATTTCGCTGTAGGAGGTTGGTTTACGGGTTCAACCTTT 1035 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 160077 | ||| ||||||||| ||||| | || ||||||||| | | ||| ||||| ||||| Sbjct 1036 GTAACTTCCTGGTATACTCATGGTTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCT 1093 Query 160078 TA 160079 || Sbjct 1094 TA 1095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549796906843520