Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq5412 324 2e-83 seq25216 174 2e-38 seq8546 172 7e-38 seq29420 170 2e-37 seq59 152 6e-32 seq3927 145 9e-30 seq8630 86.0 8e-12 >seq5412 Length=31808 Score = 324 bits (358), Expect = 2e-83 Identities = 491/694 (71%), Gaps = 10/694 (1%) Strand=Plus/Minus Query 178907 GGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCT 178965 |||| || || ||||||||||||| || | | ||||| ||| || || || | || Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 178966 TTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTC 179025 ||| | || || ||||| || |||||||| || || |||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 179026 ATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTA 179085 | || |||||||| || ||||||||||| || | | | || || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 179086 CACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCT 179145 ||||| || || || |||||||| ||||| | ||||| ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 179146 TTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGG 179205 | | || | || || |||||| | | || | | || ||||| ||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 179206 GAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTC 179265 |||||| || |||||| |||||||| || ||||| |||||| || || || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 179266 GCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCT 179325 || |||| | ||| || ||| | |||| || | ||| |||| || ||| ||| | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 179326 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAC 179385 |||||||| || || ||||||||||| |||| |||| |||||||||| || || |||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 179386 ATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTC 179445 |||||||||||||| || || ||| | || || ||||| ||||||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 179446 TCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGA 179504 | ||| || | | || || | | | ||| || | ||||| || || | || Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCT-CGAGTTTGATCAGGGAAACCACAGAAAATGA 14692 Query 179505 GTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGC 179564 || || | ||||| | | | || ||||| |||||||| ||||| ||||| || || Sbjct 14691 ATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGC 14632 Query 179565 ACATGGCTACTTCGGTCGTTTGATCTTCCAATAT 179598 ||||| || || || || || |||||||||||| Sbjct 14631 TCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 179711 TCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACG 179770 |||| |||||||| || | |||| ||||||| ||||| |||| || ||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 179771 TATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 179830 | | ||||| | | |||||||||||||||||||| ||||| || | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 179831 CACTCGACCTTGCTGC 179846 | |||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq25216 Length=8180 Score = 174 bits (192), Expect = 2e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 179224 GGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTA 179283 |||||||| || ||||| | |||| || || || || || || ||||| | ||| || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 179284 TTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCT 179343 ||| | |||| || | |||||||| || ||||||| ||||||||| || || ||| Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 179344 GGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTC 179403 |||||||| |||| |||| |||||||||| | || |||||||||||||||||||| || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 179404 CATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 || ||| | || || | ||| |||||||| || || || ||| ||||||||| || Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 >seq8546 Length=31398 Score = 172 bits (190), Expect = 7e-38 Identities = 307/445 (69%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 179404 CATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 179463 || ||| | || || ||||| |||||||| || || | ||| || |||||| || | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 179464 CTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTA 179522 | || || || | | ||| || | ||||| || || | | || || | ||||| Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086 Query 179523 TAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCG 179582 | || || ||||| || || || | || || || || || ||||| || || || || Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 179583 TTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGC 179642 || |||||||||||||| || ||| | || | ||||| || |||||| | | ||| Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 179643 GTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCT 179702 ||||| || || || || ||||| ||| || | || | || ||||| || | ||| Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 179703 CAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATG 179762 ||||| ||||| |||||||| || | |||| ||||||| ||||| ||| || Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA----TTG 12850 Query 179763 GGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACA 179822 ||| || | | ||||| || | |||||||||||||||||||| ||||| || || Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 179823 CAACTTCCCACTCGACCTTGCTGCT 179847 ||||||| || ||||| |||||| Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 170 bits (188), Expect = 2e-37 Identities = 253/359 (70%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 178975 GCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGA 179034 || ||||| || |||||||| || || |||||||| || |||| || || | | ||| Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 179035 AACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTAC 179094 ||||| || |||||||||| || | || | ||| || || ||| | ||||| || Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535 Query 179095 CCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTG 179154 || || |||||||| ||||| | ||||| ||| | || || |||||||||| | || Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595 Query 179155 GTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCT 179214 || || |||||| | | || | | || ||||| ||||||||||||||| | Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655 Query 179215 TACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCG 179274 | |||||| |||||||| || ||||| |||||| || || | || || || ||||| Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715 Query 179275 AGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCT 179333 | | | | ||| | |||| || | |||||||| || ||||||| ||||||||| Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq59 Length=339703 Score = 152 bits (168), Expect = 6e-32 Identities = 190/258 (74%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 179314 TTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 179373 || ||||||| ||||||||| || | ||||||||||| |||| |||| |||||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 179374 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 179433 || || |||||||||||||||||||| || || ||| | | || ||||| |||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 179434 GGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTG-TTCGTGAAAC 179492 || || || ||| || |||||| || | | || || | | | ||| || | ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCT-CGAGTTTGATTAGGGAAAC 52487 Query 179493 AACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAA 179552 || || | || || || | ||||| | ||| || ||||| |||||||| ||||| Sbjct 52488 CACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAA 52547 Query 179553 CATCGTCGCAGCACATGG 179570 || || || | ||||| Sbjct 52548 TATTGTAGCTACTCATGG 52565 >seq3927 Length=49767 Score = 145 bits (160), Expect = 9e-30 Identities = 180/245 (73%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 180309 TGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTT 180368 |||| ||| || |||||||| || || || | ||||| || |||||| |||| || ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 180369 GAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATC 180428 ||||| || || | || | || ||||| ||||| || ||||| | |||||| || Sbjct 26067 GAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAATT 26126 Query 180429 GCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCT 180488 || | ||||| || ||||| || || ||||| |||||||| ||||||||||||| Sbjct 26127 GCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 26186 Query 180489 CCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAAC 180548 || |||||| |||||| | || || ||||| | |||||| |||| || || || || Sbjct 26187 CCTAGTTTTGGTGTAGCATCTAT-ATTCGATTCATCCTCTTTTTTCAAGGGTTTCATAAT 26245 Query 180549 TGGAC 180553 ||||| Sbjct 26246 TGGAC 26250 >seq8630 Length=23577 Score = 86.0 bits (94), Expect = 8e-12 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 179518 GGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGT-CGCAGCACATGGCTACTT 179576 ||||| || || || ||||| || || || || || ||||| ||| || ||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 179577 CGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCT 179636 ||||| || |||||||||||||| || ||||| || || ||||| || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 179637 TGCTGCGTGGCC 179648 || || ||||| Sbjct 7617 AGCCGCTTGGCC 7628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607372598862720