Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4197 91.5 2e-13 seq270 91.5 2e-13 seq381454 86.0 9e-12 >seq4197 Length=36674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||| || || || | ||| || || | || || ||||| || || || ||| Sbjct 23420 CAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGT 23479 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAA 39735 |||||||| || || |||||||| ||||||||||| || ||| ||| |||||| ||||| Sbjct 23480 CCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCAGAGAAGAA 23538 Query 39736 GATGCCTTCTACTGCTGCAAATGCAAC 39762 ||| ||||| || ||||| ||||| Sbjct 23539 GATACCTTCAACGCAGGCAAAAGCAAC 23565 >seq270 Length=105985 Score = 91.5 bits (100), Expect = 2e-13 Identities = 279/426 (65%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| || ||||| | ||||| || |||||||| || |||| ||||| ||| Sbjct 91501 TTCTGGTAGTCGCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAATGAGATAAGA 91560 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| |||||||||| || | | || || || | | || | | | | Sbjct 91561 TCCATCCAATCAAACGGGTTGGGTACACCGTACACCTTCCCACACCCAAGCGCAACCAAC 91620 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | ||||| || ||||| || ||||| |||||| || | |||||| || || | Sbjct 91621 AGCCTATCAGCTACAAACTCAATGTACTCACTCATCAGTTTTCCATTCATCCCAATCAAC 91680 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 ||| || || || | |||||| || ||||| || || || ||| | | ||| Sbjct 91681 GCGCATGGCAGCGCGTCACAAATAAACTCCTTCTCGATCTCCACCGCATCTCTCACGATC 91740 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAA--TAAATGTTTAA-ACATTAAGCAGGCG 39622 | ||||| || ||| || | | | | | ||| | || || || || Sbjct 91741 CCTTTTACTCGGTCTTCA---GGAAGCTTCTTCTTCAGGATTTCGTAGATCAAACAAGCA 91797 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || ||||| |||| ||| || ||||| || | ||||| || || || | ||| ||| Sbjct 91798 AAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCTGGC 91857 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 || ||||| || ||||| ||||| |||| ||| ||| ||| | || || ||||||||||| Sbjct 91858 ATCAGACCGCGTTTTTTTAGCCAGAATACGGC-GCAGAAGCTTCCGGAGAAGAAGATGCC 91916 Query 39742 TTCTAC 39747 ||| || Sbjct 91917 TTCCAC 91922 >seq381454 Length=304 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || || || ||||| || |||||||||||| ||| || | || || Sbjct 125 GTACCAGCATTGAACAAGGTTGGAGAAGCATGAGTGAACCATCTTTGTGACATCAAATGA 66 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| |||||| || |||||||| || ||| ||||| | | ||| | ||||||| Sbjct 65 TATGTTTTAATAGCAGACTCTATATCATCCTTATGGATTCCAACAGAGACCCTCATCAAC 6 Query 70111 ATATG 70115 || || Sbjct 5 ATGTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 683580778382160