Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 91.5 2e-13
seq270 91.5 2e-13
seq381454 86.0 9e-12
>seq4197
Length=36674
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/147 (75%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
|| ||||| || || || | ||| || || | || || ||||| || || || |||
Sbjct 23420 CAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGT 23479
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAA 39735
|||||||| || || |||||||| ||||||||||| || ||| ||| |||||| |||||
Sbjct 23480 CCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCAGAGAAGAA 23538
Query 39736 GATGCCTTCTACTGCTGCAAATGCAAC 39762
||| ||||| || ||||| |||||
Sbjct 23539 GATACCTTCAACGCAGGCAAAAGCAAC 23565
>seq270
Length=105985
Score = 91.5 bits (100), Expect = 2e-13
Identities = 279/426 (65%), Gaps = 8/426 (2%)
Strand=Plus/Plus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| ||||| || ||||| | ||||| || |||||||| || |||| ||||| |||
Sbjct 91501 TTCTGGTAGTCGCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAATGAGATAAGA 91560
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
||||| |||||||||| || | | || || || | | || | | | |
Sbjct 91561 TCCATCCAATCAAACGGGTTGGGTACACCGTACACCTTCCCACACCCAAGCGCAACCAAC 91620
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
| ||||| || ||||| || ||||| |||||| || | |||||| || || |
Sbjct 91621 AGCCTATCAGCTACAAACTCAATGTACTCACTCATCAGTTTTCCATTCATCCCAATCAAC 91680
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
||| || || || | |||||| || ||||| || || || ||| | | |||
Sbjct 91681 GCGCATGGCAGCGCGTCACAAATAAACTCCTTCTCGATCTCCACCGCATCTCTCACGATC 91740
Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAA--TAAATGTTTAA-ACATTAAGCAGGCG 39622
| ||||| || ||| || | | | | | ||| | || || || ||
Sbjct 91741 CCTTTTACTCGGTCTTCA---GGAAGCTTCTTCTTCAGGATTTCGTAGATCAAACAAGCA 91797
Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682
|| ||||| |||| ||| || ||||| || | ||||| || || || | ||| |||
Sbjct 91798 AAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCTGGC 91857
Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741
|| ||||| || ||||| ||||| |||| ||| ||| ||| | || || |||||||||||
Sbjct 91858 ATCAGACCGCGTTTTTTTAGCCAGAATACGGC-GCAGAAGCTTCCGGAGAAGAAGATGCC 91916
Query 39742 TTCTAC 39747
||| ||
Sbjct 91917 TTCCAC 91922
>seq381454
Length=304
Score = 86.0 bits (94), Expect = 9e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || || || ||||| || |||||||||||| ||| || | || ||
Sbjct 125 GTACCAGCATTGAACAAGGTTGGAGAAGCATGAGTGAACCATCTTTGTGACATCAAATGA 66
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
||||||| |||||| || |||||||| || ||| ||||| | | ||| | |||||||
Sbjct 65 TATGTTTTAATAGCAGACTCTATATCATCCTTATGGATTCCAACAGAGACCCTCATCAAC 6
Query 70111 ATATG 70115
|| ||
Sbjct 5 ATGTG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 683580778382160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |