Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq270 125 6e-24
seq153 116 3e-21
seq7187 114 1e-20
seq4197 113 4e-20
>seq270
Length=105985
Score = 125 bits (138), Expect = 6e-24
Identities = 380/582 (65%), Gaps = 5/582 (1%)
Strand=Plus/Minus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| ||||| ||||| | | || ||| | |||||||| ||||| | || || || |
Sbjct 92368 TGTTCCCAATCCAATACCCCAAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 92309
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCAT-TAAAACCA 43825
|||| || || || || ||| | ||| |||| | || ||| | | | |||||
Sbjct 92308 GGACCGCCGAGGAGGTCGATCTAACTCAAGATATCCGTCACTGGGAGGAAACTCTAACCA 92249
Query 43826 C--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883
| | || |||||||| || ||| || | || || || || || |||||| || |
Sbjct 92248 CCGACGAGAAACATTTCATCTCTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCG 92189
Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943
| || || | | | |||| | | || | || | | || || || |
Sbjct 92188 TTCTCGAGAACCTCGCCGGAAGGTTCATGAATGATATCCAGGTCTCCGAGGCTCGCGCCT 92129
Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003
| ||||| || || || || | || || || ||||| || |||||||| || || ||
Sbjct 92128 TCTATGGTTTCCAGATCGCAGTTGAGAACATCCATTCTGAGATGTACAGCCTCCTCATTC 92069
Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTAC 44063
| ||| || || |||||||||| || | || | || || || || | |
Sbjct 92068 AAACGCTAATTCGGGACTCCGACGAGAAGCACCGCCTCTTCCACGCAATTGACACCATCC 92009
Query 44064 CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123
|||| | | | | || || | |||||| | |||||| |||| || || || |
Sbjct 92008 CTGCCGTCACAAAGAAGGCGCAGTGGGCCTTGCGATGGATCGATTCCTCCGAATCCTTCG 91949
Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCG 44182
|| ||| | ||||| || || ||||||||||| ||||| || ||| || ||||
Sbjct 91948 CCGAGCGAATCGTCGCTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGCG 91889
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
|| |||| ||| |||| ||||| ||| ||||||| || ||||| || || || ||| |
Sbjct 91888 -CCGTATTCTGGCTAAAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAACGAGCTT 91830
Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
||| | || ||||||||||| || ||||||||||| |||
Sbjct 91829 ATATCCAGAGACGAAGGCTTACACTGTGATTTTGCTTGTTTG 91788
>seq153
Length=120312
Score = 116 bits (128), Expect = 3e-21
Identities = 316/480 (66%), Gaps = 14/480 (3%)
Strand=Plus/Minus
Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302
||||| || || ||| ||| ||| |||| || ||| | ||||| |||| || | |||
Sbjct 98205 ATTGGTGGTTTAAGTGCAGAATTTGCTGATATTTTTAGAAGAGCCTTTGCTTCTAGGGTT 98146
Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362
|| || | |||| | | | |||||| || ||||| || | | || |||
Sbjct 98145 TTCCCTCCTCATGTGACAAGTAAGTTGGGAATAAAGCATGTCAAAGGTATGCTTCTCTAT 98086
Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA--A 19420
||||| || ||| ||||||||| | | || || || || | ||| | | | |
Sbjct 98085 GGGCCTCCTGGTACTGGAAAAACTCTGGTGGCTCGACAAATTGGGAAAATGTTGAATGGA 98026
Query 19421 AACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGG 19480
|| ||| | |||||||| |||||||||||| |||| | || | ||| ||| | | |
Sbjct 98025 AAGGACC--CAAAAATTGTGAATGGTCCTGAAGTCTTGAGCAAGTTTGTTGGTGAGACTG 97968
Query 19481 AAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCA 19540
|| | ||||| | | |||||||||| ||||| |||| | ||| | ||||| | |
Sbjct 97967 AAAAGAATGTGAGGGATCTGTTTGCTGATGCTGAGCAAGACC--AAAGGACTAGGGGGGA 97910
Query 19541 --AAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598
| ||| | | || |||| || | |||||| | || ||||| || ||| ||| ||
Sbjct 97909 TGAGAGTGATCTCCATGTTATCATTTTTGATGAAATTGATGCAATTTGCAAGGCAAGGGG 97850
Query 19599 TTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652
||| | || | |||||| ||||| | ||||||| || || || |||| |
Sbjct 97849 TTCAACTAGGGATGGGACTGGAGTTCATGATAGCATTGTCAACCAGCTGCTCACAAAGAT 97790
Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATT 19712
|| ||||| | ||| ||||| |||| ||||||| ||||| || ||| ||| ||
Sbjct 97789 TGATGGTGTGGAGGCACTCAATAACGTTTTGCTTATTGGTATGACCAACAGAAAGGATTT 97730
>seq7187
Length=32952
Score = 114 bits (126), Expect = 1e-20
Identities = 312/474 (66%), Gaps = 18/474 (4%)
Strand=Plus/Plus
Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302
|| || ||||| ||| | || ||| |||| || ||| | || || |||| || || |||
Sbjct 23453 ATAGGTGGATTAAGTGATGAATTTGCTGATATATTTAGAAGGGCCTTTGCTTCTCGAGTT 23512
Query 19303 TTTTCTGCAGATGTCAT---TAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTT 19359
|| || | | || | ||||| | || || |||||||| || | | |||
Sbjct 23513 TTCCCTCCTCACGTGACAAGTAAACTA--GGCATA-AAACATGTCAAGGGTATGCTTCTT 23569
Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTT 19416
|||||||| || ||| ||||||||| | | || || || || | ||| ||| |
Sbjct 23570 TATGGGCCTCCTGGTACTGGAAAAACTCTTGTGGCTCGACAAATTGGAAAAATGTTAAAT 23629
Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476
|| || || |||||||| ||||| |||||| | || | ||| | ||| || |
Sbjct 23630 GGAAGGGAA---CCAAAAATTGTCAATGGGCCTGAAGTGTTGAGTAAGTTTGTTGGCGAG 23686
Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536
| ||| | ||||| | | ||||||| || ||||| |||| |||||| | |||
Sbjct 23687 ACTGAAAAGAATGTGAGGGATCTGTTTGCCGATGCTGAGCAAGATCAAAAAACTCGGGGG 23746
Query 19537 CGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596
| ||| | | || | || || | |||||| | || ||||| |||||| ||||
Sbjct 23747 AATGAGAGTGATCTTCATGTCATCATTTTCGATGAAATTGATGCAATTTGTAAGTCAAGA 23806
Query 19597 GGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAA 19650
||||| | | || |||||| ||||| | |||| || ||||| || ||||
Sbjct 23807 GGTTCAACTCGAGACGGAACTGGAGTGCATGATAGCATTGTTAACCAACTATTGACAAAG 23866
Query 19651 TTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704
|||| || || | ||| |||||| |||| ||||||| ||||| ||||||
Sbjct 23867 ATAGATGGAGTAGAGGCACTTAATAATGTTTTGCTTATTGGTATGACCAATAGA 23920
>seq4197
Length=36674
Score = 113 bits (124), Expect = 4e-20
Identities = 230/339 (68%), Gaps = 2/339 (1%)
Strand=Plus/Minus
Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002
|| || || || || || || || || ||||| || || ||||||||||| ||||| |
Sbjct 23757 TTCTACGGCTTCCAGATCGCAATCGAGAATATCCACTCTGAAATGTACAGCCTTCTTCTC 23698
Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062
|| || || ||| | ||||||||| || | || | || || || || ||
Sbjct 23697 GAAACCCTGATTCGAGACTCGTCCGAGAAGCACCGGCTCTTCCACGCCATCGATACTGTT 23638
Query 44063 CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122
|| || | | | ||||| |||||||| || ||||| |||| || || ||
Sbjct 23637 CCCGCTGTCACCAAGAAAGCCGACTGGGCGCTCCGCTGGATTGATTCCGCAGAATCCTTC 23578
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGC 44181
| || || | || || ||||| || ||||| || ||||| || || | | | |||
Sbjct 23577 GCTGAGCGCATAGTTGCTTTTGCCTGCGTTGAAGGTATCTTCTTCTCTGGAAGCTTCTGC 23518
Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241
|| ||||||||| |||| || ||||| |||||||||| | || || || || |||||
Sbjct 23517 -GCGATATTTTGGCTAAAAAAGCGAGGACTGATGCCTGGACTAACCTTCTCGAACGAGTT 23459
Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280
|| || || |||||||| || |||||||| |||||
Sbjct 23458 GATCTCCCGCGACGAAGGCTTGCACTGCGATTTCGCTTG 23420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395578496601970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |