Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq270 125 6e-24 seq153 116 3e-21 seq7187 114 1e-20 seq4197 113 4e-20 >seq270 Length=105985 Score = 125 bits (138), Expect = 6e-24 Identities = 380/582 (65%), Gaps = 5/582 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | || ||| | |||||||| ||||| | || || || | Sbjct 92368 TGTTCCCAATCCAATACCCCAAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 92309 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCAT-TAAAACCA 43825 |||| || || || || ||| | ||| |||| | || ||| | | | ||||| Sbjct 92308 GGACCGCCGAGGAGGTCGATCTAACTCAAGATATCCGTCACTGGGAGGAAACTCTAACCA 92249 Query 43826 C--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 | | || |||||||| || ||| || | || || || || || |||||| || | Sbjct 92248 CCGACGAGAAACATTTCATCTCTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCG 92189 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 | || || | | | |||| | | || | || | | || || || | Sbjct 92188 TTCTCGAGAACCTCGCCGGAAGGTTCATGAATGATATCCAGGTCTCCGAGGCTCGCGCCT 92129 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 | ||||| || || || || | || || || ||||| || |||||||| || || || Sbjct 92128 TCTATGGTTTCCAGATCGCAGTTGAGAACATCCATTCTGAGATGTACAGCCTCCTCATTC 92069 Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTAC 44063 | ||| || || |||||||||| || | || | || || || || | | Sbjct 92068 AAACGCTAATTCGGGACTCCGACGAGAAGCACCGCCTCTTCCACGCAATTGACACCATCC 92009 Query 44064 CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 |||| | | | | || || | |||||| | |||||| |||| || || || | Sbjct 92008 CTGCCGTCACAAAGAAGGCGCAGTGGGCCTTGCGATGGATCGATTCCTCCGAATCCTTCG 91949 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCG 44182 || ||| | ||||| || || ||||||||||| ||||| || ||| || |||| Sbjct 91948 CCGAGCGAATCGTCGCTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGCG 91889 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || |||| ||| |||| ||||| ||| ||||||| || ||||| || || || ||| | Sbjct 91888 -CCGTATTCTGGCTAAAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAACGAGCTT 91830 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||| | || ||||||||||| || ||||||||||| ||| Sbjct 91829 ATATCCAGAGACGAAGGCTTACACTGTGATTTTGCTTGTTTG 91788 >seq153 Length=120312 Score = 116 bits (128), Expect = 3e-21 Identities = 316/480 (66%), Gaps = 14/480 (3%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || || ||| ||| ||| |||| || ||| | ||||| |||| || | ||| Sbjct 98205 ATTGGTGGTTTAAGTGCAGAATTTGCTGATATTTTTAGAAGAGCCTTTGCTTCTAGGGTT 98146 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 || || | |||| | | | |||||| || ||||| || | | || ||| Sbjct 98145 TTCCCTCCTCATGTGACAAGTAAGTTGGGAATAAAGCATGTCAAAGGTATGCTTCTCTAT 98086 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA--A 19420 ||||| || ||| ||||||||| | | || || || || | ||| | | | | Sbjct 98085 GGGCCTCCTGGTACTGGAAAAACTCTGGTGGCTCGACAAATTGGGAAAATGTTGAATGGA 98026 Query 19421 AACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGG 19480 || ||| | |||||||| |||||||||||| |||| | || | ||| ||| | | | Sbjct 98025 AAGGACC--CAAAAATTGTGAATGGTCCTGAAGTCTTGAGCAAGTTTGTTGGTGAGACTG 97968 Query 19481 AAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCA 19540 || | ||||| | | |||||||||| ||||| |||| | ||| | ||||| | | Sbjct 97967 AAAAGAATGTGAGGGATCTGTTTGCTGATGCTGAGCAAGACC--AAAGGACTAGGGGGGA 97910 Query 19541 --AAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 | ||| | | || |||| || | |||||| | || ||||| || ||| ||| || Sbjct 97909 TGAGAGTGATCTCCATGTTATCATTTTTGATGAAATTGATGCAATTTGCAAGGCAAGGGG 97850 Query 19599 TTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652 ||| | || | |||||| ||||| | ||||||| || || || |||| | Sbjct 97849 TTCAACTAGGGATGGGACTGGAGTTCATGATAGCATTGTCAACCAGCTGCTCACAAAGAT 97790 Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATT 19712 || ||||| | ||| ||||| |||| ||||||| ||||| || ||| ||| || Sbjct 97789 TGATGGTGTGGAGGCACTCAATAACGTTTTGCTTATTGGTATGACCAACAGAAAGGATTT 97730 >seq7187 Length=32952 Score = 114 bits (126), Expect = 1e-20 Identities = 312/474 (66%), Gaps = 18/474 (4%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 || || ||||| ||| | || ||| |||| || ||| | || || |||| || || ||| Sbjct 23453 ATAGGTGGATTAAGTGATGAATTTGCTGATATATTTAGAAGGGCCTTTGCTTCTCGAGTT 23512 Query 19303 TTTTCTGCAGATGTCAT---TAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTT 19359 || || | | || | ||||| | || || |||||||| || | | ||| Sbjct 23513 TTCCCTCCTCACGTGACAAGTAAACTA--GGCATA-AAACATGTCAAGGGTATGCTTCTT 23569 Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTT 19416 |||||||| || ||| ||||||||| | | || || || || | ||| ||| | Sbjct 23570 TATGGGCCTCCTGGTACTGGAAAAACTCTTGTGGCTCGACAAATTGGAAAAATGTTAAAT 23629 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 || || || |||||||| ||||| |||||| | || | ||| | ||| || | Sbjct 23630 GGAAGGGAA---CCAAAAATTGTCAATGGGCCTGAAGTGTTGAGTAAGTTTGTTGGCGAG 23686 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 | ||| | ||||| | | ||||||| || ||||| |||| |||||| | ||| Sbjct 23687 ACTGAAAAGAATGTGAGGGATCTGTTTGCCGATGCTGAGCAAGATCAAAAAACTCGGGGG 23746 Query 19537 CGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596 | ||| | | || | || || | |||||| | || ||||| |||||| |||| Sbjct 23747 AATGAGAGTGATCTTCATGTCATCATTTTCGATGAAATTGATGCAATTTGTAAGTCAAGA 23806 Query 19597 GGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAA 19650 ||||| | | || |||||| ||||| | |||| || ||||| || |||| Sbjct 23807 GGTTCAACTCGAGACGGAACTGGAGTGCATGATAGCATTGTTAACCAACTATTGACAAAG 23866 Query 19651 TTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 |||| || || | ||| |||||| |||| ||||||| ||||| |||||| Sbjct 23867 ATAGATGGAGTAGAGGCACTTAATAATGTTTTGCTTATTGGTATGACCAATAGA 23920 >seq4197 Length=36674 Score = 113 bits (124), Expect = 4e-20 Identities = 230/339 (68%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || || || || ||||| || || ||||||||||| ||||| | Sbjct 23757 TTCTACGGCTTCCAGATCGCAATCGAGAATATCCACTCTGAAATGTACAGCCTTCTTCTC 23698 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || || ||| | ||||||||| || | || | || || || || || Sbjct 23697 GAAACCCTGATTCGAGACTCGTCCGAGAAGCACCGGCTCTTCCACGCCATCGATACTGTT 23638 Query 44063 CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 || || | | | ||||| |||||||| || ||||| |||| || || || Sbjct 23637 CCCGCTGTCACCAAGAAAGCCGACTGGGCGCTCCGCTGGATTGATTCCGCAGAATCCTTC 23578 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGC 44181 | || || | || || ||||| || ||||| || ||||| || || | | | ||| Sbjct 23577 GCTGAGCGCATAGTTGCTTTTGCCTGCGTTGAAGGTATCTTCTTCTCTGGAAGCTTCTGC 23518 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 || ||||||||| |||| || ||||| |||||||||| | || || || || ||||| Sbjct 23517 -GCGATATTTTGGCTAAAAAAGCGAGGACTGATGCCTGGACTAACCTTCTCGAACGAGTT 23459 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 || || || |||||||| || |||||||| ||||| Sbjct 23458 GATCTCCCGCGACGAAGGCTTGCACTGCGATTTCGCTTG 23420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395578496601970