Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 122 7e-23
seq45117 122 7e-23
seq1982 98.7 8e-16
seq9434 93.3 4e-14
seq87 93.3 4e-14
seq4209 82.4 6e-11
>seq48644
Length=2856
Score = 122 bits (134), Expect = 7e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || |||||||| ||||||||| | | | || |||| || |||||||| |||
Sbjct 1864 GTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCG 1923
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| || ||||| || | || || || || |||||| ||||
Sbjct 1924 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTC 1983
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | | |||||| ||||| ||||| | || || || || |||
Sbjct 1984 ACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTT 2043
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 2044 TTCACAAAGATCTGCAT 2060
>seq45117
Length=3449
Score = 122 bits (134), Expect = 7e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || |||||||| ||||||||| | | | || |||| || |||||||| |||
Sbjct 2457 GTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCG 2516
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | ||||||||||| || ||||| || | || || || || |||||| ||||
Sbjct 2517 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTC 2576
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | | |||||| ||||| ||||| | || || || || |||
Sbjct 2577 ACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTT 2636
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 2637 TTCACAAAGATCTGCAT 2653
>seq1982
Length=56187
Score = 98.7 bits (108), Expect = 8e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150
||||||||||||| || |||||| | ||||| ||||| || ||||| || | ||||| |
Sbjct 32275 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 32216
Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210
| || ||||||| |||| | || | ||||| | || ||||| || || ||||
Sbjct 32215 TGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTA 32156
Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| | || ||||| || |||||||| ||||| |||||
Sbjct 32155 TCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCAT 32119
Score = 86.0 bits (94), Expect = 5e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150
||||||||||||| || |||||| | ||||| ||||| || ||||| || | ||||| |
Sbjct 21938 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 21879
Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210
| || |||||| |||| | || | ||||| | | ||||| || || ||||
Sbjct 21878 TGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTTA 21819
Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| | || ||||| | |||||||| ||||| |||||
Sbjct 21818 TCGTCTTCCCCGTTAAGGTTTTCACGAAGATCTGCAT 21782
>seq9434
Length=50679
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079
|| || |||| || | |||| ||| | ||||| || || || ||||||||||| |||
Sbjct 44939 CCACCACGCAGGCGAAGGACCAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCT 44998
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
|| | ||| | |||||||| || || ||||| | ||||| | || || || || ||
Sbjct 44999 AGTG-TACGCCCATCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGG 45057
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||| |||||||| ||| || || | | || | |||||||| || ||
Sbjct 45058 GATACCTTCTTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCGAC 45117
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| |||||||| | ||| || ||||| ||||| ||||| || |||||
Sbjct 45118 CTCAAGAGTTATGGTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCAT 45165
>seq87
Length=177581
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || ||||| || ||||| | | ||| | |||||||| || |||||
Sbjct 54469 GTGGACTCCTTCTGAATGTTATAGTCTGCGAGAGTACGCCCATCTTCGAGTTGCTTACCC 54528
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | ||||| | || || || ||||| | |||||| ||||| ||| || ||
Sbjct 54529 GCAAAGATGAGTCTTTGCTGGTCTGGCGGGATACCCTCCTTATCTTGGATTTTTGCCTTG 54588
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||||| | |||||||| |||||||| | || || || || |||
Sbjct 54589 ACATTGTCAATGGTGTCTGAGCTCTCAACTTCAAGAGTTATTGTCTTACCAGTGAGGGTT 54648
Query 27231 TTCACAAAGATTTGCATAGCT 27251
|||||||||||||||||| ||
Sbjct 54649 TTCACAAAGATTTGCATACCT 54669
>seq4209
Length=73032
Score = 82.4 bits (90), Expect = 6e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
|| |||||||| || || || | ||||||||||| || || || || | || || ||
Sbjct 79 TCCTCGAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTG 138
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| || | | |||| ||||||| | ||||| ||||| |||||
Sbjct 139 TCTTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAACCTCTAGGGTTATG 198
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || || |||| |||||||||||||| |||||
Sbjct 199 GTCTTTCCGGTCAATGTTTTCACAAAGATCTGCAT 233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422927094084528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |