Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq48644 122 7e-23 seq45117 122 7e-23 seq1982 98.7 8e-16 seq9434 93.3 4e-14 seq87 93.3 4e-14 seq4209 82.4 6e-11 >seq48644 Length=2856 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || |||||||| ||||||||| | | | || |||| || |||||||| ||| Sbjct 1864 GTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCG 1923 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || |||||| |||| Sbjct 1924 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTC 1983 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| ||||| ||||| | || || || || ||| Sbjct 1984 ACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTT 2043 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 2044 TTCACAAAGATCTGCAT 2060 >seq45117 Length=3449 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || |||||||| ||||||||| | | | || |||| || |||||||| ||| Sbjct 2457 GTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCG 2516 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || |||||| |||| Sbjct 2517 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTC 2576 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| ||||| ||||| | || || || || ||| Sbjct 2577 ACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTT 2636 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 2637 TTCACAAAGATCTGCAT 2653 >seq1982 Length=56187 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 ||||||||||||| || |||||| | ||||| ||||| || ||||| || | ||||| | Sbjct 32275 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 32216 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||||||| |||| | || | ||||| | || ||||| || || |||| Sbjct 32215 TGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTA 32156 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | || ||||| || |||||||| ||||| ||||| Sbjct 32155 TCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCAT 32119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 ||||||||||||| || |||||| | ||||| ||||| || ||||| || | ||||| | Sbjct 21938 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 21879 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || |||||| |||| | || | ||||| | | ||||| || || |||| Sbjct 21878 TGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTTA 21819 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | || ||||| | |||||||| ||||| ||||| Sbjct 21818 TCGTCTTCCCCGTTAAGGTTTTCACGAAGATCTGCAT 21782 >seq9434 Length=50679 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || |||| || | |||| ||| | ||||| || || || ||||||||||| ||| Sbjct 44939 CCACCACGCAGGCGAAGGACCAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCT 44998 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | ||| | |||||||| || || ||||| | ||||| | || || || || || Sbjct 44999 AGTG-TACGCCCATCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGG 45057 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| |||||||| ||| || || | | || | |||||||| || || Sbjct 45058 GATACCTTCTTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCGAC 45117 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| | ||| || ||||| ||||| ||||| || ||||| Sbjct 45118 CTCAAGAGTTATGGTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCAT 45165 >seq87 Length=177581 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| || ||||| | | ||| | |||||||| || ||||| Sbjct 54469 GTGGACTCCTTCTGAATGTTATAGTCTGCGAGAGTACGCCCATCTTCGAGTTGCTTACCC 54528 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | || || || ||||| | |||||| ||||| ||| || || Sbjct 54529 GCAAAGATGAGTCTTTGCTGGTCTGGCGGGATACCCTCCTTATCTTGGATTTTTGCCTTG 54588 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| | |||||||| |||||||| | || || || || ||| Sbjct 54589 ACATTGTCAATGGTGTCTGAGCTCTCAACTTCAAGAGTTATTGTCTTACCAGTGAGGGTT 54648 Query 27231 TTCACAAAGATTTGCATAGCT 27251 |||||||||||||||||| || Sbjct 54649 TTCACAAAGATTTGCATACCT 54669 >seq4209 Length=73032 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| || || || | ||||||||||| || || || || | || || || Sbjct 79 TCCTCGAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTG 138 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | |||| ||||||| | ||||| ||||| ||||| Sbjct 139 TCTTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAACCTCTAGGGTTATG 198 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || |||| |||||||||||||| ||||| Sbjct 199 GTCTTTCCGGTCAATGTTTTCACAAAGATCTGCAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422927094084528