Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2652 107 2e-18 seq4197 91.5 2e-13 seq2786 91.5 2e-13 seq270 86.0 8e-12 >seq2652 Length=45542 Score = 107 bits (118), Expect = 2e-18 Identities = 198/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||||||||| | | || || || || || |||||||||||||| | || Sbjct 43218 AAACCATCCATCTCGGTCAACAGCTGGTTGATCGTCTGCTCTCTCTCATCATTGCC--GC 43161 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 ||| || || | | ||| | ||||| |||||||||||||||||||||||||| | Sbjct 43160 CCCCCAGGCCGGCGCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAAGACAATGC 43101 Query 11658 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 | || ||| | || ||| | ||||| ||||| | ||||| ||| || || Sbjct 43100 AGGGGGCCTTGCTCTT----GGCCTTCTCAAACAGATCCCTCACCCTCGAGGCCCCAACC 43045 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 || || |||| |||||| || | | ||| | ||| || ||| || || | ||| Sbjct 43044 CCTACGAACAGCTCCACGAACTCAGAGGCCGCGCAAGAGAAGAAGGGCACCCCGGCTTCC 42985 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCC 11821 ||||| | || | || || || ||||| ||||| || ||| |||| Sbjct 42984 CCCGCCACTGCCCTCGCCAGCAGCGTCTTCCCCGTCCCAGGCGGACCC 42937 >seq4197 Length=36674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || || ||||| || | || || |||||| ||| || ||||| || || ||||| Sbjct 23441 CCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGCATCAGTCCTCGCTTT 23500 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | |||| | || |||||||| || |||||||||||||| || || || ||||| Sbjct 23501 TTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATACCTTCAACGCAGGCAAAA 23560 Query 122797 GCAAAAAGGCGTTCGGCGAAGGA 122819 |||| | ||| || |||||||| Sbjct 23561 GCAACTATGCGCTCAGCGAAGGA 23583 >seq2786 Length=62223 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTG---TC 11538 |||||| || || | | || || || |||||||| | ||| ||||| |||| || Sbjct 37744 ATCAAGAATGTCTGCTCTGTTGGTAGCAGCAATAACGATAATTCCAGT---ATTGCCCTC 37688 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 || |||||||| || || | | ||| || | ||||||||||| |||||||| || Sbjct 37687 GAATCCATCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTCCCTCC 37628 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | | || | || | ||| | || || |||||||| ||||||| || || || || Sbjct 37627 ACCAACCCCTGTACCTCTTTGTCTACCAACAGCATCAATTTCATCAACAAACACTATGCA 37568 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || ||| || || | | || || || || || || |||||| |||||||| Sbjct 37567 AGGAGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCAAC 37508 Query 11719 AAACATCTCCACAAA 11733 ||||||||| ||||| Sbjct 37507 AAACATCTCAACAAA 37493 >seq270 Length=105985 Score = 86.0 bits (94), Expect = 8e-12 Identities = 143/206 (69%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | || || |||| ||| ||||| || || |||||| | ||| Sbjct 91795 GCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCT 91854 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| ||||| || || || | ||| | | |||||||| |||||||||||||| Sbjct 91855 GGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATG 91914 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || ||||| || || || || | | || ||||||||||| || | ||| | | Sbjct 91915 CCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGA---GGAATCGATC 91971 Query 122839 CATTTCATTGCCCATTTCGCCTTCTT 122864 ||| || ||||| | ||||||||| Sbjct 91972 CATCGCAAGGCCCACTGCGCCTTCTT 91997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624989232062400