Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4197 91.5 2e-13 seq270 91.5 2e-13 >seq4197 Length=36674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| |||||||| | || ||||||||| || || ||||| || || ||||| Sbjct 23441 CCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGCATCAGTCCTCGCTTT 23500 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||| || ||||| || || |||||||||||||| || || || || || || Sbjct 23501 TTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATACCTTCAACGCAGGCAAAA 23560 Query 130154 GCAAAGAGACGCTCAGCAAAGGA 130176 |||| | |||||||| ||||| Sbjct 23561 GCAACTATGCGCTCAGCGAAGGA 23583 >seq270 Length=105985 Score = 91.5 bits (100), Expect = 2e-13 Identities = 247/369 (67%), Gaps = 13/369 (4%) Strand=Plus/Plus Query 129858 ACTCAATGTACTCAGACATC--TTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGC 129915 |||||||||||||| |||| || || ||||| || || | ||||| ||||| Sbjct 91637 ACTCAATGTACTCACTCATCAGTTTTCCA--TTCATCCCAATCAACGCGCATGGCAGCGC 91694 Query 129916 GTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAAT--GGTC 129973 ||| | || ||| ||||||| || ||||| || || | |||||| | | | |||| Sbjct 91695 GTCACAAATAAACTCCTTCTCGATCTCCACCGCATCTCTCACGATCCCTTTTACTCGGTC 91754 Query 129974 TCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACG-GCAAACTCCTGGTGGAG 130032 | | | || | | || || | | | ||| | || ||||| || ||| | Sbjct 91755 TTCAGGA-AGCT-TCTTCTTCAGGATTTCGTAGA-TCAAACAAGCAAAATCACAGTGTAA 91811 Query 130033 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 130092 || ||||| | ||| || || || || |||||| || |||||||| ||||| || || Sbjct 91812 GCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCTGGCATCAGACCGCGTTT 91871 Query 130093 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 130152 || | |||||| | || || || || ||||||||||| || ||||| || ||||| Sbjct 91872 TTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAAGCGAA 91931 Query 130153 CGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 130212 || | || ||||| || ||||| ||| | ||| | ||| || |||||||| Sbjct 91932 AGCGACGATTCGCTCGGCGAAGGATTCGGA---GGAATCGATCCATCGCAAGGCCCACTG 91988 Query 130213 CGCCTTTTT 130221 |||||| || Sbjct 91989 CGCCTTCTT 91997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615438927838640