Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4197 125 8e-24 seq2652 114 1e-20 seq270 102 9e-17 seq2786 95.1 1e-14 >seq4197 Length=36674 Score = 125 bits (138), Expect = 8e-24 Identities = 171/238 (72%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| | | |||||| | |||||| | || ||||| | | |||||||| || Sbjct 23673 GAGAAGCACCGGCTCTTCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGAC 23614 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGT--TCCTTTGCTGAGCGACTCTTCGCAT 94819 ||||| | ||| ||||| | ||| ||||| |||||||| | | || | Sbjct 23613 TGGGCGCTCCGCTGGATTGATTC-----CGCAGAATCCTTCGCTGAGCGCATAGTTGCTT 23559 Query 94820 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 94879 |||| || ||||| ||||||||||||||||| ||||||||| || | |||||| || | Sbjct 23558 TTGCCTGCGTTGAAGGTATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAA 23499 Query 94880 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||||| || ||||| || || |||||| |||||| | ||||| || ||||| || Sbjct 23498 AGCGAGGACTGATGCCTGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGG 23441 >seq2652 Length=45542 Score = 114 bits (126), Expect = 1e-20 Identities = 221/321 (69%), Gaps = 14/321 (4%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 |||||||||||||| ||||| || ||||| || || || || | |||||||| | || Sbjct 43218 AAACCATCCATCTCGGTCAACAGCTGGTTGATCGTCTGCTCTCTCTCATCATTGCC--GC 43161 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 ||| || || | | ||| | ||||| ||||||||||||||||||||||| |||| Sbjct 43160 CCCCCAGGCCGGCGCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAAGACAATGC 43101 Query 9732 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 | || ||| | || || | ||||| ||||||| || | | ||| || || Sbjct 43100 AGGGGGCCTTGCTCTTGGCCTTC----TCAAACAGATCCCTCACCCTCGAGGCCCCAACC 43045 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || || |||| |||||| || | | ||| | || || |||||| || | ||| Sbjct 43044 CCTACGAACAGCTCCACGAACTCAGAGGCCGCGCAAGAGAAGAAGGGCACCCCGGCTTCC 42985 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 ||||| | || | || || || ||||| ||||| || ||| |||| | || | ||| Sbjct 42984 CCCGCCACTGCCCTCGCCAGCAGCGTCTTCCCCGTCCCAGGCGGACCCACCAGCA-AGCA 42926 Query 9908 CCTCGT-GGAATCTTGGCGCC 9927 || | | |||||||| || || Sbjct 42925 CCCCTTAGGAATCTTAGCTCC 42905 >seq270 Length=105985 Score = 102 bits (112), Expect = 9e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || |||||| || |||| || || || || || || ||||||||||| || | Sbjct 91955 TCCTTCGCCGAGCGAATCGTCGCTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGC 91896 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| | | ||||| || || || ||||| |||||||| | |||||||||| Sbjct 91895 TTCTGCGCCGTATTCTGGCTAAAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAAC 91836 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || | ||||| || | ||| || ||||| Sbjct 91835 GAGCTTATATCCAGAGACGAAGGCTTACACTGTGATTTTGC 91795 >seq2786 Length=62223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 190/279 (68%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 || || |||||||| || |||||||||||||| | ||||||||| | |||||||||| || Sbjct 37689 TCGAATCCATCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTCCCT 37630 Query 9671 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | || | || | ||| | || || |||||||| ||||||| || || ||| Sbjct 37629 CCACCAACCCCTGTACCTCTTTGTCTACCAACAGCATCAATTTCATCAACAAACACTATG 37570 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || || ||| || || | || || || || || | ||| || |||||| Sbjct 37569 CAAGGAGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCA 37510 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||| ||||| | | | | | || | | ||| || ||| | ||| || Sbjct 37509 ACAAACATCTCAACAAACTCAGAACCAG-AGATAGAAAAGAAAGGTACACCGGCTTCCCC 37451 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| || || | ||||||||| || || ||||| Sbjct 37450 AGCAATAGCCTTAGCCAAAAGAGTCTTTCCGGTTCCTGG 37412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580434945168560