Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 125 8e-24
seq2652 114 1e-20
seq270 102 9e-17
seq2786 95.1 1e-14
>seq4197
Length=36674
Score = 125 bits (138), Expect = 8e-24
Identities = 171/238 (72%), Gaps = 7/238 (3%)
Strand=Plus/Minus
Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761
|||||| | | |||||| | |||||| | || ||||| | | |||||||| ||
Sbjct 23673 GAGAAGCACCGGCTCTTCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGAC 23614
Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGT--TCCTTTGCTGAGCGACTCTTCGCAT 94819
||||| | ||| ||||| | ||| ||||| |||||||| | | || |
Sbjct 23613 TGGGCGCTCCGCTGGATTGATTC-----CGCAGAATCCTTCGCTGAGCGCATAGTTGCTT 23559
Query 94820 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 94879
|||| || ||||| ||||||||||||||||| ||||||||| || | |||||| || |
Sbjct 23558 TTGCCTGCGTTGAAGGTATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAA 23499
Query 94880 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937
||||||| || ||||| || || |||||| |||||| | ||||| || ||||| ||
Sbjct 23498 AGCGAGGACTGATGCCTGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGG 23441
>seq2652
Length=45542
Score = 114 bits (126), Expect = 1e-20
Identities = 221/321 (69%), Gaps = 14/321 (4%)
Strand=Plus/Minus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
|||||||||||||| ||||| || ||||| || || || || | |||||||| | ||
Sbjct 43218 AAACCATCCATCTCGGTCAACAGCTGGTTGATCGTCTGCTCTCTCTCATCATTGCC--GC 43161
Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
||| || || | | ||| | ||||| ||||||||||||||||||||||| ||||
Sbjct 43160 CCCCCAGGCCGGCGCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAAGACAATGC 43101
Query 9732 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787
| || ||| | || || | ||||| ||||||| || | | ||| || ||
Sbjct 43100 AGGGGGCCTTGCTCTTGGCCTTC----TCAAACAGATCCCTCACCCTCGAGGCCCCAACC 43045
Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847
|| || |||| |||||| || | | ||| | || || |||||| || | |||
Sbjct 43044 CCTACGAACAGCTCCACGAACTCAGAGGCCGCGCAAGAGAAGAAGGGCACCCCGGCTTCC 42985
Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907
||||| | || | || || || ||||| ||||| || ||| |||| | || | |||
Sbjct 42984 CCCGCCACTGCCCTCGCCAGCAGCGTCTTCCCCGTCCCAGGCGGACCCACCAGCA-AGCA 42926
Query 9908 CCTCGT-GGAATCTTGGCGCC 9927
|| | | |||||||| || ||
Sbjct 42925 CCCCTTAGGAATCTTAGCTCC 42905
>seq270
Length=105985
Score = 102 bits (112), Expect = 9e-17
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
||||| || |||||| || |||| || || || || || || ||||||||||| || |
Sbjct 91955 TCCTTCGCCGAGCGAATCGTCGCTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGC 91896
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| | | ||||| || || || ||||| |||||||| | ||||||||||
Sbjct 91895 TTCTGCGCCGTATTCTGGCTAAAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAAC 91836
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||||||| || | ||||| || | ||| || |||||
Sbjct 91835 GAGCTTATATCCAGAGACGAAGGCTTACACTGTGATTTTGC 91795
>seq2786
Length=62223
Score = 95.1 bits (104), Expect = 1e-14
Identities = 190/279 (68%), Gaps = 2/279 (1%)
Strand=Plus/Minus
Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670
|| || |||||||| || |||||||||||||| | ||||||||| | |||||||||| ||
Sbjct 37689 TCGAATCCATCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTCCCT 37630
Query 9671 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| | || | || | ||| | || || |||||||| ||||||| || || |||
Sbjct 37629 CCACCAACCCCTGTACCTCTTTGTCTACCAACAGCATCAATTTCATCAACAAACACTATG 37570
Query 9731 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790
|| || ||| || || | || || || || || | ||| || ||||||
Sbjct 37569 CAAGGAGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCA 37510
Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849
||||||||||| ||||| | | | | | || | | ||| || ||| | ||| ||
Sbjct 37509 ACAAACATCTCAACAAACTCAGAACCAG-AGATAGAAAAGAAAGGTACACCGGCTTCCCC 37451
Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
||||| || || | ||||||||| || || |||||
Sbjct 37450 AGCAATAGCCTTAGCCAAAAGAGTCTTTCCGGTTCCTGG 37412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 580434945168560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |