Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 178 1e-39
seq270 113 5e-20
>seq4197
Length=36674
Score = 178 bits (196), Expect = 1e-39
Identities = 553/839 (66%), Gaps = 23/839 (3%)
Strand=Plus/Minus
Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652
|||||||||| || | || |||||| ||| ||||||| |||||||| | ||| |
Sbjct 23963 TGTATAAGAAGGCCGAAGCCTCGTTCTGGACCGCCGAGGAGGTTGACCTCTCACAAGATC 23904
Query 59653 TGAAGGATTGGGACAAG---CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709
| ||||||| | || | || || ||| |||| || ||| ||||| |
Sbjct 23903 TCCGTCATTGGGAGGAAACCCTAACTTCTGATGAGAAGCACTTTATCTCTCATGTCCTCG 23844
Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGG 59769
|||||||||| || || || || ||| | || ||| | | || || ||||
Sbjct 23843 CCTTCTTCGCAGCCTCCGACGGGATCGTGCTCGAGAATCTCGCTGGGAGGTTCATGAAGG 23784
Query 59770 ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAA-CGAGTCTAT 59827
| ||||| || ||||||| || | ||||||| | ||| ||| ||| |||| |||
Sbjct 23783 AGATCCAGGTTTCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCG--CAATCGAGAATAT 23726
Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887
|||||| || | |||| || | |||| | || | || || ||||||
Sbjct 23725 CCACTCTGAAATGTACAGCCTTCTTCTCGAAACCCTGATTCGAGACTCGTCCGAGAAGCA 23666
Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947
| || |||| ||||| || || ||||| || | | ||||| || ||||| |
Sbjct 23665 CCGGCTCTTCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGACTGGGCGCT 23606
Query 59948 GCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006
| ||||| || ||| | || ||| || || | || | | |||||||| ||||| |
Sbjct 23605 CCGCTGGATTGATTCC-GCAGAATCCTTCGCTGAGCGCATAGTTGCTTTTGCCTGCGTTG 23547
Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066
|||| |||||||||||||| ||||| || || || ||||| |||||||| || || |
Sbjct 23546 AAGGTATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGAGGACTGA 23487
Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126
|||| || || | ||||| |||||| |||| ||||| ||||| ||| | || || |
Sbjct 23486 TGCCTGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGGCTTGCACTGCGATT 23427
Query 60127 TTGCAGTGACGC-TCTATTCACACCTATTG-GAAAAATGCCCTTCC-AAGGA---TATTC 60180
| || || | | ||||| | || || | || | | ||||| |||| |||
Sbjct 23426 TCGC-TTGTCTCATCTAT---GAGTTACTGAGGAACAAG--CTTCCGGAGGAACGGGTTC 23373
Query 60181 ACAAGATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCA 60239
| || || || || ||| || | ||||| |||||| | || ||||| ||
Sbjct 23372 AAGGAATAGTAAAGGAAGC-GGTGGAGATAGAGAGGGAGTTCGTGTGCGACGCGCTGCCC 23314
Query 60240 TGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGAC 60299
||| | ||||| ||| ||| || |||| || ||||| ||||||| |||||
Sbjct 23313 TGCGCGTTGATAGGGATGAACGGTGTGCTCATGAGCCAATACATAGAGTTTGTGGCGGAT 23254
Query 60300 CGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGG 60359
| || |||| | | ||| || | ||||| ||| ||||| || || |||
Sbjct 23253 AGGCTTCTGGCTGCGCTAGGATGTGGGAAGGTGTACGGTGTGTCAAACCCATTTGATTGG 23194
Query 60360 ATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
|||||| |||||| ||| | |||||| |||| |||||||||||| | || ||||||||
Sbjct 23193 ATGGAGCTCATCTCCTTGCAGGGGAAGGCCAATTTCTTTGAGAAGAGAGTTGGGGATTA 23135
>seq270
Length=105985
Score = 113 bits (124), Expect = 5e-20
Identities = 292/439 (67%), Gaps = 6/439 (1%)
Strand=Plus/Minus
Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737
||||||| | ||||||||| ||||| ||||||||||| || || ||||| ||
Sbjct 92247 CGACGAGAAACATTTCATCTCTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGT 92188
Query 59738 GATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTT 59797
| || || | | | | || || ||| ||||| | ||||||| || | ||
Sbjct 92187 TCTCGAGAACCTCGCCGGAAGGTTCATGAATGATATCCAGGTCTCCGAGGCTCGCGCCTT 92128
Query 59798 CTACGCGTATCAG-TCGTTCAAC-GAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855
||| | | ||| ||| || ||| ||||| || |||| |||| ||| | ||
Sbjct 92127 CTATGGTTTCCAGATCG--CAGTTGAGAACATCCATTCTGAGATGTACAGCCTCCTCATT 92070
Query 59856 GATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCC 59915
| | | | | ||| | || |||||| | || |||| || || || || |
Sbjct 92069 CAAACGCTAATTCGGGACTCCGACGAGAAGCACCGCCTCTTCCACGCAATTGACACCATC 92010
Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATT 59974
|| || || | | | || || | |||||| ||| ||||| || |||| | ||| ||
Sbjct 92009 CCTGCCGTCACAAAGAAGGCGCAGTGGGCCTTGCGATGGATCGATTCCTCC-GAATCCTT 91951
Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034
|| | || || | ||||| || ||||||||||| ||||||||||| || |||||
Sbjct 91950 CGCCGAGCGAATCGTCGCTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTG 91891
Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094
|| | |||||||| ||||| || || || ||||| || ||| ||||||||||||||
Sbjct 91890 CGCCGTATTCTGGCTAAAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAACGAGCT 91831
Query 60095 GATTTCCCGGGACGAGGGC 60113
|| ||| | ||||| |||
Sbjct 91830 TATATCCAGAGACGAAGGC 91812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545867238483360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |