Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4197 178 1e-39 seq270 113 5e-20 >seq4197 Length=36674 Score = 178 bits (196), Expect = 1e-39 Identities = 553/839 (66%), Gaps = 23/839 (3%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||||||||| || | || |||||| ||| ||||||| |||||||| | ||| | Sbjct 23963 TGTATAAGAAGGCCGAAGCCTCGTTCTGGACCGCCGAGGAGGTTGACCTCTCACAAGATC 23904 Query 59653 TGAAGGATTGGGACAAG---CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 | ||||||| | || | || || ||| |||| || ||| ||||| | Sbjct 23903 TCCGTCATTGGGAGGAAACCCTAACTTCTGATGAGAAGCACTTTATCTCTCATGTCCTCG 23844 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGG 59769 |||||||||| || || || || ||| | || ||| | | || || |||| Sbjct 23843 CCTTCTTCGCAGCCTCCGACGGGATCGTGCTCGAGAATCTCGCTGGGAGGTTCATGAAGG 23784 Query 59770 ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAA-CGAGTCTAT 59827 | ||||| || ||||||| || | ||||||| | ||| ||| ||| |||| ||| Sbjct 23783 AGATCCAGGTTTCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCG--CAATCGAGAATAT 23726 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| || | |||| || | |||| | || | || || |||||| Sbjct 23725 CCACTCTGAAATGTACAGCCTTCTTCTCGAAACCCTGATTCGAGACTCGTCCGAGAAGCA 23666 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | || |||| ||||| || || ||||| || | | ||||| || ||||| | Sbjct 23665 CCGGCTCTTCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGACTGGGCGCT 23606 Query 59948 GCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 | ||||| || ||| | || ||| || || | || | | |||||||| ||||| | Sbjct 23605 CCGCTGGATTGATTCC-GCAGAATCCTTCGCTGAGCGCATAGTTGCTTTTGCCTGCGTTG 23547 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 |||| |||||||||||||| ||||| || || || ||||| |||||||| || || | Sbjct 23546 AAGGTATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGAGGACTGA 23487 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126 |||| || || | ||||| |||||| |||| ||||| ||||| ||| | || || | Sbjct 23486 TGCCTGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGGCTTGCACTGCGATT 23427 Query 60127 TTGCAGTGACGC-TCTATTCACACCTATTG-GAAAAATGCCCTTCC-AAGGA---TATTC 60180 | || || | | ||||| | || || | || | | ||||| |||| ||| Sbjct 23426 TCGC-TTGTCTCATCTAT---GAGTTACTGAGGAACAAG--CTTCCGGAGGAACGGGTTC 23373 Query 60181 ACAAGATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCA 60239 | || || || || ||| || | ||||| |||||| | || ||||| || Sbjct 23372 AAGGAATAGTAAAGGAAGC-GGTGGAGATAGAGAGGGAGTTCGTGTGCGACGCGCTGCCC 23314 Query 60240 TGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGAC 60299 ||| | ||||| ||| ||| || |||| || ||||| ||||||| ||||| Sbjct 23313 TGCGCGTTGATAGGGATGAACGGTGTGCTCATGAGCCAATACATAGAGTTTGTGGCGGAT 23254 Query 60300 CGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGG 60359 | || |||| | | ||| || | ||||| ||| ||||| || || ||| Sbjct 23253 AGGCTTCTGGCTGCGCTAGGATGTGGGAAGGTGTACGGTGTGTCAAACCCATTTGATTGG 23194 Query 60360 ATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||| |||||| ||| | |||||| |||| |||||||||||| | || |||||||| Sbjct 23193 ATGGAGCTCATCTCCTTGCAGGGGAAGGCCAATTTCTTTGAGAAGAGAGTTGGGGATTA 23135 >seq270 Length=105985 Score = 113 bits (124), Expect = 5e-20 Identities = 292/439 (67%), Gaps = 6/439 (1%) Strand=Plus/Minus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 ||||||| | ||||||||| ||||| ||||||||||| || || ||||| || Sbjct 92247 CGACGAGAAACATTTCATCTCTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGT 92188 Query 59738 GATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTT 59797 | || || | | | | || || ||| ||||| | ||||||| || | || Sbjct 92187 TCTCGAGAACCTCGCCGGAAGGTTCATGAATGATATCCAGGTCTCCGAGGCTCGCGCCTT 92128 Query 59798 CTACGCGTATCAG-TCGTTCAAC-GAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855 ||| | | ||| ||| || ||| ||||| || |||| |||| ||| | || Sbjct 92127 CTATGGTTTCCAGATCG--CAGTTGAGAACATCCATTCTGAGATGTACAGCCTCCTCATT 92070 Query 59856 GATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCC 59915 | | | | | ||| | || |||||| | || |||| || || || || | Sbjct 92069 CAAACGCTAATTCGGGACTCCGACGAGAAGCACCGCCTCTTCCACGCAATTGACACCATC 92010 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATT 59974 || || || | | | || || | |||||| ||| ||||| || |||| | ||| || Sbjct 92009 CCTGCCGTCACAAAGAAGGCGCAGTGGGCCTTGCGATGGATCGATTCCTCC-GAATCCTT 91951 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | || || | ||||| || ||||||||||| ||||||||||| || ||||| Sbjct 91950 CGCCGAGCGAATCGTCGCTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTG 91891 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || | |||||||| ||||| || || || ||||| || ||| |||||||||||||| Sbjct 91890 CGCCGTATTCTGGCTAAAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAACGAGCT 91831 Query 60095 GATTTCCCGGGACGAGGGC 60113 || ||| | ||||| ||| Sbjct 91830 TATATCCAGAGACGAAGGC 91812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545867238483360