Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 134 2e-26
seq270 102 9e-17
seq55 86.0 7e-12
>seq4197
Length=36674
Score = 134 bits (148), Expect = 2e-26
Identities = 493/757 (65%), Gaps = 34/757 (4%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
||||| || || | ||| ||||| || |||| |||||| | ||| |||||| |||||||
Sbjct 23135 TAATCCCCAACTCTCTTCTCAAAGAAATTGGCCTTCCCCTGCAAGGAGATGAGCTCCATC 23194
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC---CAAACTGTGCCATGAGG 74579
|| || || ||||| ||||||| | |||| | | | | | |||| ||
Sbjct 23195 CAATCAAATGGGTTTGACACACCGTACAC---CTTCCCACATCCTAGCGCAGCCAGAAGC 23251
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
| |||||||||||| | ||||| || |||| | | | ||| || || | |
Sbjct 23252 CTATCCGCCACAAACTCTATGTATTGGCTCATGAGCACACCGTTCATCCCTATCAACGCG 23311
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGC--CCATTGGACAATCT 74697
|| ||||| || ||| | ||||| ||||| | ||| || || || || ||
Sbjct 23312 CAGGGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCTTCCTTT--ACTATTC 23369
Query 74698 TGTGAAT--GT--CTTTGGAAGGGCACTTTTCCCTCAGG---TGAGAGTAAAGCGTCACG 74750
|||| || || ||||| ||| | |||||| | | || | | | || |
Sbjct 23370 CTTGAACCCGTTCCTCCGGAAG----CTTGTTCCTCAGTAACTCATAG--ATGAGACAAG 23423
Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810
||| | | ||| ||||||| || | | ||||| || ||||| || | || |||
Sbjct 23424 CGAAATCGCAG-TGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCA 23482
Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870
||||| ||||| ||||| || | |||||| || || |||||| ||| |||||||||
Sbjct 23483 GGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATA 23542
Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAA 74930
||||| || || ||||| || || | ||| | ||||| | | | ||||| |||||
Sbjct 23543 CCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCAATCCAG 23602
Query 74931 GTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG 74990
| ||||| || ||||| |||| || || ||||||||||| || ||||||||
Sbjct 23603 CGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGAAGAGC 23662
Query 74991 CTTGCCTTCTCTTCGG--GATCCTTG-ACGAGCTTGTCAATCATAAGTGAGTACGTCTCC 75047
| |||| |||| || || | | || | || | | ||| |||| | ||
Sbjct 23663 CGGTGCTTC---TCGGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTACATTTCA 23719
Query 75048 GAATGAATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCT 75105
|| || || |||| ||| ||| |||| | ||||||| | || ||||| | || ||
Sbjct 23720 GAGTGGATATTCTCGATTG--CGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACCT 23777
Query 75106 GTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165
| | ||||| || || ||| |||||| | ||||| ||||| ||||| ||||
Sbjct 23778 GGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGCGA 23837
Query 75166 AAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202
| || || || || ||||||||| ||||||
Sbjct 23838 AGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATC 23874
>seq270
Length=105985
Score = 102 bits (112), Expect = 9e-17
Identities = 469/730 (64%), Gaps = 28/730 (4%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || || || | ||| ||||| || || |||||||||| || ||||| ||||||
Sbjct 91507 TAGTCGCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAATGAGATAAGATCCATC 91566
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579
|| || || ||||| | ||||||| | |||| | ||||| | ||| ||
Sbjct 91567 CAATCAAACGGGTTGGGTACACCGTACAC---CTTCCCACACCCAAGCGCAACCAACAGC 91623
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCAT---TTCTCCCGCATCCATGCCGATGAGT 74636
| ||| || ||||| | |||||||| |||| || ||| || ||| || || |
Sbjct 91624 CTATCAGCTACAAACTCAATGTACTCACTCATCAGTTTTCC---ATTCATCCCAATCAAC 91680
Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATC 74696
||| ||||| || || |||||||| |||| | ||| || | || |||
Sbjct 91681 GCGCATGGCAGCGCGTCACAAATAAACTCCTTCTCGATCTCCACCGCATCTCTCACGATC 91740
Query 74697 T-TGTGAAT--GTCTTT-GGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGC 74752
| | | | ||||| ||||| ||| | | ||||| ||| | | ||
Sbjct 91741 CCTTTTACTCGGTCTTCAGGAAG----CTTCTTCTTCAGGATTTCGTAGATCAAACAAGC 91796
Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812
||| || || ||||||| |||||| ||| | || || || || | | || ||
Sbjct 91797 AAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCTGG 91856
Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872
||| || || || || || | ||| || | ||| |||||| || ||||||||||||
Sbjct 91857 CATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATGCC 91916
Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGT 74932
||| || || || || ||||| | || | ||||| | | | |||| |||||
Sbjct 91917 TTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGAATCGATCCATCG 91976
Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCT 74992
| ||||| | || || | |||| ||||||| || || || || ||||||||||
Sbjct 91977 CAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGCGTGGAAGAGGCG 92036
Query 74993 TGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATG 75052
|||||| |||| ||| | ||| | | ||| | || |||| |||| |||||
Sbjct 92037 GTGCTTCTCGTCGGAGTCCCGAATTAGCGTTTGAATGAGGAGGCTGTACATCTCAGAATG 92096
Query 75053 AATCGACTC-GTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACA 75110
|| ||| || ||| |||| | | ||||| | || ||||| | | ||| | |
Sbjct 92097 GATGTTCTCAACTG--CGATCTGGAAACCATAGAAGGCGCGAGCCTCGGAGACCTGGATA 92154
Query 75111 TCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAA 75168
|| || || || ||| | ||| ||||| | ||||| ||||| ||||||||||| |
Sbjct 92155 TCATTCATG-AACCTTC-CGGCGAGGTTCTCGAGAACGATTCCGTCGGAGGCGGCGAAGA 92212
Query 75169 AAGCCAGTAC 75178
| || || ||
Sbjct 92213 AGGCGAGGAC 92222
>seq55
Length=230967
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 30101 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 30042
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 30041 TGAGCTATGAAAGC 30028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 544564779521200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |