Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4197 134 2e-26 seq270 102 9e-17 seq55 86.0 7e-12 >seq4197 Length=36674 Score = 134 bits (148), Expect = 2e-26 Identities = 493/757 (65%), Gaps = 34/757 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 ||||| || || | ||| ||||| || |||| |||||| | ||| |||||| ||||||| Sbjct 23135 TAATCCCCAACTCTCTTCTCAAAGAAATTGGCCTTCCCCTGCAAGGAGATGAGCTCCATC 23194 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC---CAAACTGTGCCATGAGG 74579 || || || ||||| ||||||| | |||| | | | | | |||| || Sbjct 23195 CAATCAAATGGGTTTGACACACCGTACAC---CTTCCCACATCCTAGCGCAGCCAGAAGC 23251 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 | |||||||||||| | ||||| || |||| | | | ||| || || | | Sbjct 23252 CTATCCGCCACAAACTCTATGTATTGGCTCATGAGCACACCGTTCATCCCTATCAACGCG 23311 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGC--CCATTGGACAATCT 74697 || ||||| || ||| | ||||| ||||| | ||| || || || || || Sbjct 23312 CAGGGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCTTCCTTT--ACTATTC 23369 Query 74698 TGTGAAT--GT--CTTTGGAAGGGCACTTTTCCCTCAGG---TGAGAGTAAAGCGTCACG 74750 |||| || || ||||| ||| | |||||| | | || | | | || | Sbjct 23370 CTTGAACCCGTTCCTCCGGAAG----CTTGTTCCTCAGTAACTCATAG--ATGAGACAAG 23423 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 ||| | | ||| ||||||| || | | ||||| || ||||| || | || ||| Sbjct 23424 CGAAATCGCAG-TGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCA 23482 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| ||||| ||||| || | |||||| || || |||||| ||| ||||||||| Sbjct 23483 GGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATA 23542 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAA 74930 ||||| || || ||||| || || | ||| | ||||| | | | ||||| ||||| Sbjct 23543 CCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCAATCCAG 23602 Query 74931 GTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG 74990 | ||||| || ||||| |||| || || ||||||||||| || |||||||| Sbjct 23603 CGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGAAGAGC 23662 Query 74991 CTTGCCTTCTCTTCGG--GATCCTTG-ACGAGCTTGTCAATCATAAGTGAGTACGTCTCC 75047 | |||| |||| || || | | || | || | | ||| |||| | || Sbjct 23663 CGGTGCTTC---TCGGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTACATTTCA 23719 Query 75048 GAATGAATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCT 75105 || || || |||| ||| ||| |||| | ||||||| | || ||||| | || || Sbjct 23720 GAGTGGATATTCTCGATTG--CGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACCT 23777 Query 75106 GTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 | | ||||| || || ||| |||||| | ||||| ||||| ||||| |||| Sbjct 23778 GGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGCGA 23837 Query 75166 AAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202 | || || || || ||||||||| |||||| Sbjct 23838 AGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATC 23874 >seq270 Length=105985 Score = 102 bits (112), Expect = 9e-17 Identities = 469/730 (64%), Gaps = 28/730 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || | ||| ||||| || || |||||||||| || ||||| |||||| Sbjct 91507 TAGTCGCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAATGAGATAAGATCCATC 91566 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 || || || ||||| | ||||||| | |||| | ||||| | ||| || Sbjct 91567 CAATCAAACGGGTTGGGTACACCGTACAC---CTTCCCACACCCAAGCGCAACCAACAGC 91623 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCAT---TTCTCCCGCATCCATGCCGATGAGT 74636 | ||| || ||||| | |||||||| |||| || ||| || ||| || || | Sbjct 91624 CTATCAGCTACAAACTCAATGTACTCACTCATCAGTTTTCC---ATTCATCCCAATCAAC 91680 Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATC 74696 ||| ||||| || || |||||||| |||| | ||| || | || ||| Sbjct 91681 GCGCATGGCAGCGCGTCACAAATAAACTCCTTCTCGATCTCCACCGCATCTCTCACGATC 91740 Query 74697 T-TGTGAAT--GTCTTT-GGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGC 74752 | | | | ||||| ||||| ||| | | ||||| ||| | | || Sbjct 91741 CCTTTTACTCGGTCTTCAGGAAG----CTTCTTCTTCAGGATTTCGTAGATCAAACAAGC 91796 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 ||| || || ||||||| |||||| ||| | || || || || | | || || Sbjct 91797 AAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCTGG 91856 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || || || || || | ||| || | ||| |||||| || |||||||||||| Sbjct 91857 CATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATGCC 91916 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGT 74932 ||| || || || || ||||| | || | ||||| | | | |||| ||||| Sbjct 91917 TTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGAATCGATCCATCG 91976 Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCT 74992 | ||||| | || || | |||| ||||||| || || || || |||||||||| Sbjct 91977 CAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGCGTGGAAGAGGCG 92036 Query 74993 TGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATG 75052 |||||| |||| ||| | ||| | | ||| | || |||| |||| ||||| Sbjct 92037 GTGCTTCTCGTCGGAGTCCCGAATTAGCGTTTGAATGAGGAGGCTGTACATCTCAGAATG 92096 Query 75053 AATCGACTC-GTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACA 75110 || ||| || ||| |||| | | ||||| | || ||||| | | ||| | | Sbjct 92097 GATGTTCTCAACTG--CGATCTGGAAACCATAGAAGGCGCGAGCCTCGGAGACCTGGATA 92154 Query 75111 TCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAA 75168 || || || || ||| | ||| ||||| | ||||| ||||| ||||||||||| | Sbjct 92155 TCATTCATG-AACCTTC-CGGCGAGGTTCTCGAGAACGATTCCGTCGGAGGCGGCGAAGA 92212 Query 75169 AAGCCAGTAC 75178 | || || || Sbjct 92213 AGGCGAGGAC 92222 >seq55 Length=230967 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 30101 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 30042 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 30041 TGAGCTATGAAAGC 30028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544564779521200