Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq48644 145 7e-30 seq45117 145 7e-30 seq9434 136 3e-27 seq87 131 1e-25 seq1077 98.7 9e-16 seq35801 86.0 5e-12 >seq48644 Length=2856 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || ||||| ||| | || || || || || ||| | ||| Sbjct 2060 ATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCTTCC 2001 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || ||||| |||||||| ||||| || || Sbjct 2000 GACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAG 1941 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||||||| | || ||| || ||| | |||| |||||| Sbjct 1940 CAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTACAAC 1881 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||||||||| ||| | || |||| | ||| | || |||||| Sbjct 1880 ATTCAAAAGGAGTCTACCCTCCACCTGGTGCTCCGTCTCCGTGGTGGC 1833 >seq45117 Length=3449 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || ||||| ||| | || || || || || ||| | ||| Sbjct 2653 ATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCTTCC 2594 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || ||||| |||||||| ||||| || || Sbjct 2593 GACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAG 2534 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||||||| | || ||| || ||| | |||| |||||| Sbjct 2533 CAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTACAAC 2474 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||||||||| ||| | || |||| | ||| | || |||||| Sbjct 2473 ATTCAAAAGGAGTCTACCCTCCACCTGGTGCTCCGTCTCCGTGGTGGC 2426 >seq9434 Length=50679 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| ||||| || || || |||||| |||| || |||||||| || || Sbjct 45849 ATGCAGATATTCGTAAAGACCCTAACTGGCAAGACTATCACACTTGAAGTCGAGAGCTCA 45790 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||| || || || || || ||||| Sbjct 45789 GACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 45730 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||| ||| | ||||| | |||| || | ||||| ||| Sbjct 45729 CAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGATGGAAGGACCCTTGCAGATTATAAC 45670 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || ||||| | ||| | || ||||| || Sbjct 45669 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTTCGTGGTGGTAT 45620 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || || |||||||||| |||||||| || Sbjct 45621 ATGCAAATTTTTGTCAAGACCCTTACTGGGAAAACTATTACTCTGGAAGTGGAGAGCTCA 45562 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||| || || || || || || ||||| || || Sbjct 45561 GACACCATTGACAACGTGAAGGCAAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 45502 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || ||| | ||||| | ||| || | ||||| ||| Sbjct 45501 CAGAGGTTGATCTTTGCTGGGAAGCAACTCGAAGATGGAAGGACTCTTGCAGATTATAAC 45442 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | |||||||| | ||| | || ||||| || Sbjct 45441 ATCCAAAAGGAGTCAACACTTCATTTGGTCCTTCGTCTTCGTGGTGGTAT 45392 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||| ||| | || ||| | |||||||| || Sbjct 45393 ATGCAGATTTTTGTCAAGACCCTGACCGGAAAGACCATCACTTTGGAAGTGGAGAGCTCG 45334 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||| || || || || || ||||| || ||| Sbjct 45333 GACACCATTGACAATGTAAAGGCGAAGATTCAGGATAAGGAGGGAATTCCACCAGACCAA 45274 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || | ||||| | ||| | | || || ||| Sbjct 45273 CAGAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGAAGGACATTAGCAGACTATAAC 45214 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||||| | || ||||| | ||| | || || || || Sbjct 45213 ATTCAAAAGGAGTCGACACTTCACTTGGTGCTTCGTCTCCGTGGAGGAAT 45164 >seq87 Length=177581 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| |||||| |||||||||||||||| || || Sbjct 55349 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACTATTACTCTTGAAGTTGAGAGCTCT 55290 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || |||||||| || || || || || || || || Sbjct 55289 GACACCATTGACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATTCCTCCAGACCAG 55230 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||| ||| | ||||| | |||| || | ||||| ||| Sbjct 55229 CAGAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATAAC 55170 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | |||||||| | ||| | || ||||| || Sbjct 55169 ATCCAGAAAGAATCAACCCTGCATTTGGTGCTCCGTCTTCGTGGTGGTAT 55120 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || |||||| | || || || ||||| || ||| Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| |||||||| || || || ||| Sbjct 55517 GACACAATTGACAACGTAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAA 55458 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || ||||||||||| || || || | ||||| || Sbjct 55457 CAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAAT 55398 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || ||||| | ||| || ||||||| || Sbjct 55397 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTGAGGGGTGGAAT 55348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||| ||| | ||||| | |||||||| || Sbjct 54893 ATGCAGATTTTCGTGAAGACCCTGACCGGAAAGACCATTACATTGGAAGTGGAGAGCTCG 54834 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||| || ||||| || || ||||| ||||| Sbjct 54833 GACACAATTGACAATGTGAAGGCGAAGATTCAGGATAAAGAGGGAATTCCACCAGATCAG 54774 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || | ||||| | ||| | | ||||| ||| Sbjct 54773 CAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACATTGGCAGATTATAAC 54714 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || |||| | ||| | || || || || Sbjct 54713 ATTCAAAAGGAGTCAACTCTCCACCTGGTCCTTCGTCTTCGTGGAGGTAT 54664 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || |||||||| || ||| || Sbjct 55805 ATGCAGATCTTCGTGAAAACACTTACAGGTAAGACCATCACTCTTGAGGTCGAAAGCTCT 55746 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||||||||| || || || || || || ||||| Sbjct 55745 GACACAATCGACAATGTTAAGGCTAAAATTCAAGATAAGGAGGGGATTCCTCCAGATCAG 55686 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||| || ||| | |||||| | ||| | | || || || Sbjct 55685 CAAAGGCTGATCTTTGCCGGAAAGCAACTTGAAGACGGAAGAACCCTAGCTGACTATAAT 55626 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || ||||| | ||| | || || || || Sbjct 55625 ATCCAGAAGGAGTCCACACTCCACCTGGTTCTCCGTCTTCGTGGAGGGAT 55576 >seq1077 Length=76872 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGA--AGTGGAACCGT 27045 ||||||||||| || | || || || || ||| || || || || ||| || | | Sbjct 52624 ATGCAGATATTCGTGAGGACACTAACGGGGAAGATGATAACGCTAGAGGAGTCGAGTCTT 52683 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||||| | ||| | | || || || || || ||||| |||||| | |||| || | Sbjct 52684 CCGACACCATTTACAATGTGAAGGCTAAGATACAGGACAAGGAAGGCGTCCCACTGGACC 52743 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||| | |||||||||| || ||||| | |||||| || || || |||| |||| Sbjct 52744 AGCAGAGGATAATATACGCTGGAAAACAGCTTGAAGACCGTACGCTCG---CCGACTACA 52800 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||| ||||||||||| | ||| |||| | ||| | || ||||| Sbjct 52801 ACGTTCAGAAGGAGTCGACGATTCATCTGGTGATCCGTCTTCGTGGTGG 52849 >seq35801 Length=5147 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || ||| |||| || ||| | || || || || || ||| || Sbjct 130 ATGCAGATATTCGTCAAGACTTTGACAGGGAAGACCATCACCCTCGAGGTTGAAAGCTCG 189 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| || || || || || || || Sbjct 190 GACACCATAGATAATGTCAAGGCGAAGATTCAGGACAAGGAGGGGATTCCGCCAGACCAG 249 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || | || || | ||| | | ||||||||| Sbjct 250 CAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGGACATTGGCTGATTACAAC 309 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||| |||||| | || | ||| | ||| | || ||||| Sbjct 310 ATTCAGAAGGAATCGACCCTTCACCTTGTTCTTCGTCTCCGTGGTGG 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432867116530442