Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 316 2e-81
seq8546 190 2e-43
seq29420 170 2e-37
seq25216 165 1e-35
seq59 161 1e-34
>seq5412
Length=31808
Score = 316 bits (350), Expect = 2e-81
Identities = 457/645 (71%), Gaps = 6/645 (1%)
Strand=Plus/Minus
Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265
||||| | || || ||||| || || || || ||||| || |||||||| ||||| ||
Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177
Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325
|||||||| || || |||||||| || ||||| || || | | | | |
Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117
Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385
|| || || | ||||| || ||||| |||||||| ||| | ||||| |||||| | |||
Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057
Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445
||||| || ||||| | || |||| || |||||| | | ||| | | |||||||
Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997
Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505
|| || | ||||||||||||| | | || || ||||| |||||||| |||||| ||
Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937
Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565
|| || || || | | || | || |||||| | |||| ||| | ||| |||||
Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGC 14877
Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625
|| ||| ||||||||||||| || ||||| ||||| |||||||| ||| ||||||||||
Sbjct 14876 TTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 14817
Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685
|| ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || |
Sbjct 14816 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGAC 14757
Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745
|| | || ||| | ||| || | | || || || | | || || ||
Sbjct 14756 GGCTACCTATTC------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACC 14703
Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805
|| ||||| ||||| || | ||||||| | || ||||| |||||||| || ||
Sbjct 14702 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAAT 14643
Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTAT 176850
|| |||||||| || ||||| ||||| || | |||||||| |||
Sbjct 14642 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 176963 TCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATA 177022
|||| |||||||| ||||| | || | ||| || ||| ||| |||| ||||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 177023 TCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 177082
| ||||||| | ||||||||||||||||||||||| || |||||||||| |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 177083 CACTTGACCTTGCTGC 177098
| || ||||| || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 190 bits (210), Expect = 2e-43
Identities = 311/446 (70%), Gaps = 8/446 (2%)
Strand=Plus/Minus
Query 176656 CATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGT 176715
|| ||| | || ||||| ||||| || || || || | ||| | ||||| || |
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 176716 CTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTAC 176775
| || || ||| | | || || || || ||||| |||| || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 176776 AAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGT 176835
| ||| || ||||| || || || | || ||||||||||| || ||||| ||||| ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 176836 CTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTT--CACTTCTTCCTTGCAG 176893
| |||||||| |||||| |||||| | || | |||| || |||||| | | |
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTC--TCATTCTTTACATTTCTTCTTAGTTG 12967
Query 176894 CATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACC 176953
| | || || || | || ||||||||| | | ||| || | || |||||||| | ||
Sbjct 12966 CTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCC 12907
Query 176954 TTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACAT 177013
| ||||| ||||| |||||||| ||||| | || | ||| || ||| |
Sbjct 12906 TAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT----ATT 12851
Query 177014 GGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTC 177073
||| ||||| ||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct 12850 GGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 12791
Query 177074 ACAACTTCCCACTTGACCTTGCTGCT 177099
| ||||||| || ||||| ||||||
Sbjct 12790 ATAACTTCCATCTAGACCTAGCTGCT 12765
>seq29420
Length=7120
Score = 170 bits (188), Expect = 2e-37
Identities = 253/359 (70%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 176227 GCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGA 176286
|| || || || ||||| || |||||||| ||||| || | |||||||| || | |||
Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475
Query 176287 AACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTAC 176346
||||| || ||||| || | | | || | || || || || | ||||| ||
Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535
Query 176347 CCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTC 176406
||||| |||||||| ||| | ||||| |||||| | |||||||| || || || | ||
Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595
Query 176407 GTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGT 176466
||| || |||||| | | ||| | | ||||||||| || | ||||||||||||
Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655
Query 176467 TACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCG 176526
| | | || || ||||| |||||||| |||||| || || | || || | || ||
Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715
Query 176527 ATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCT 176585
| | ||||| | |||| ||| | ||||||||| || |||||||||||||||||
Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq25216
Length=8180
Score = 165 bits (182), Expect = 1e-35
Identities = 178/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 176476 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTT 176535
|| ||||| |||||||| | |||| || || || || || | || || | || |||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 176536 TTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCA 176595
||| | |||| ||| | ||||||||| || ||||||||||||||||| || |||||
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 176596 GGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTC 176655
||||| |||||||| ||| |||||||||| | ||||||||||| || |||||||||||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 176656 CATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGG 176711
|| ||| | || |||| ||||| || || || || || ||| || ||||| ||
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018
>seq59
Length=339703
Score = 161 bits (178), Expect = 1e-34
Identities = 191/259 (74%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625
|| ||||||||||||||||| || |||| ||||| |||||||| ||| ||||||||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685
|| ||||||||||| || ||||||||||| || ||| | | ||||| ||||| || ||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745
|| || || ||| | ||||| || | | || || || | |||| || ||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805
|| ||||| ||||| || | ||||||| || || ||||| |||||||| || ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 176806 ATTGTAGCTGCACACGGTT 176824
||||||||| | || ||||
Sbjct 52549 ATTGTAGCTACTCATGGTT 52567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 600570514894080
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