Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq48644 95.1 1e-14 seq45117 95.1 1e-14 >seq48644 Length=2856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| ||||| || || || ||||| || || || |||| || Sbjct 1851 CACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTC 1910 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| || || || ||||||||||||| ||||||| | || || |||||| Sbjct 1911 TAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCTTCCTTGTCCT 1969 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| ||| | | | | || ||| || || || || | || || | | Sbjct 1970 GGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCT 2029 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || || || ||||| |||||||| |||||||| Sbjct 2030 TCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063 >seq45117 Length=3449 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| ||||| || || || ||||| || || || |||| || Sbjct 2444 CACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTC 2503 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| || || || ||||||||||||| ||||||| | || || |||||| Sbjct 2504 TAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCTTCCTTGTCCT 2562 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| ||| | | | | || ||| || || || || | || || | | Sbjct 2563 GGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCT 2622 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || || || ||||| |||||||| |||||||| Sbjct 2623 TCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427516511689322