Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq87 118 7e-22
seq9434 104 2e-17
seq48644 98.7 7e-16
seq45117 98.7 7e-16
seq184 98.7 7e-16
seq22012 91.5 1e-13
seq35801 86.0 4e-12
>seq87
Length=177581
Score = 118 bits (130), Expect = 7e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| |||||||| |||||||| || || || | |||||||| | |
Sbjct 55121 ATGCAGATTTTCGTCAAAACCCTTACGGGAAAGACCATTACGTTGGAAGTTGAGAGCTCT 55062
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | ||| || ||| || || || || | || ||||| ||
Sbjct 55061 GACACAATTGACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAG 55002
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || ||||||||||| ||||| ||||| | | | || | | ||||| |||
Sbjct 55001 CAGAGATTGATCTTTGCCGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATAAC 54942
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || ||||||||||| | ||||| |||
Sbjct 54941 ATCCAGAAAGAGTCCACCCTTCATTTGGTT 54912
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||| || ||||| || || || | ||||| || | ||
Sbjct 54893 ATGCAGATTTTCGTGAAGACCCTGACCGGAAAGACCATTACATTGGAAGTGGAGAGCTCG 54834
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || ||| || ||||| || | || ||||||||
Sbjct 54833 GACACAATTGACAATGTGAAGGC-GAAGATTCAGGATAAAGAGGGAATTCCACCAGATCA 54775
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || ||||| || || || || ||||| | | | || || | ||||| ||
Sbjct 54774 GCAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACATTGGCAGATTATAA 54715
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| ||||| ||
Sbjct 54714 CATTCAAAAGGAGTCAAC 54697
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || ||||||||||| || || || || ||||| |||||||| | |
Sbjct 54665 ATGCAAATCTTTGTGAAAACCCTCACTGGTAAGACAATAACTCTTGAAGTTGAGAGCTCA 54606
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | |||||| || || || ||| | |||||||| ||
Sbjct 54605 GACACCATTGACAATGTCAAGGC-AAAAATCCAAGATAAGGAGGGTATCCCGCCAGACCA 54547
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | | || ||||| || || ||||| ||||| | || ||| | | || || ||
Sbjct 54546 GCAAAGACTCATCTTTGCGGGTAAGCAACTCGAAGATGGGCGTACTCTCGCAGACTATAA 54487
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 54486 CATTCAGAAGGAGTCCAC 54469
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || ||||| || || || |||||||| ||||||||||| | |
Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | |||| || || ||||| ||||| | || || || |||
Sbjct 55517 GACACAATTGACAACGTAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAA 55458
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || |||||||| || ||| ||||||| | ||||| | | ||||| ||
Sbjct 55457 CAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAAT 55398
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || || |||||
Sbjct 55397 ATCCAGAAGGAATCCAC 55381
>seq9434
Length=50679
Score = 104 bits (114), Expect = 2e-17
Identities = 148/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||||||||| ||||||||||| || || ||||| || ||||| || || || |
Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| |||| ||| | || | |||||| || ||||||||| | || || || |
Sbjct 45106 AGACACTATTGACAATGTCAAGGC-AAAAATCCAAGATAAAGAAGGTATCCCACCTGACC 45048
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || | | || |||||||| || ||||| ||||| | || || ||| || ||||
Sbjct 45047 AGCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTACA 44988
Query 23789 ACATACAAAAAGAGTCCACATTACAT 23814
| || || || ||||| ||| | |||
Sbjct 44987 ATATCCAGAAGGAGTCTACACTTCAT 44962
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || ||||| || ||||| || |||||| | ||||| || | ||
Sbjct 45393 ATGCAGATTTTTGTCAAGACCCTGACCGGAAAGACCATCACTTTGGAAGTGGAGAGCTCG 45334
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | |||| || ||| || || || || | || ||||| |||
Sbjct 45333 GACACCATTGACAATGTAAAGGCGAAGATTCAGGATAAGGAGGGAATTCCACCAGACCAA 45274
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || ||||| || || || || ||||| | | | || |||| || || |||
Sbjct 45273 CAGAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGAAGGACATTAGCAGACTATAAC 45214
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| ||||| ||||| ||| | || || ||
Sbjct 45213 ATTCAAAAGGAGTCGACACTTCACTTGGT 45185
Score = 102 bits (112), Expect = 5e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| || ||||| || | |
Sbjct 45849 ATGCAGATATTCGTAAAGACCCTAACTGGCAAGACTATCACACTTGAAGTCGAGAGCTCA 45790
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | || ||||| || || | || ||||||||
Sbjct 45789 GACACAATTGACAATGTCAAAGCTAAGA-TTCAAGACAAGGAGGGAATTCCCCCAGATCA 45731
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || ||||||||||| ||||| ||||| | | | || | | ||||| ||
Sbjct 45730 GCAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGATGGAAGGACCCTTGCAGATTATAA 45671
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || || |||||
Sbjct 45670 CATCCAGAAGGAATCCAC 45653
Score = 95.1 bits (104), Expect = 8e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| |||||||| || || || || ||||| ||||| ||||| | |
Sbjct 46077 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTTGAAAGCTCT 46018
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | ||||| || || ||||| || || | || || || |||
Sbjct 46017 GACACAATTGACAACGTAAAAGCTAAGATCCAAGACAAGGAGGGAATTCCCCCTGACCAA 45958
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || |||||||| || ||||| || || | | | || | | ||||||||
Sbjct 45957 CAAAGACTTATCTTTGCCGGAAAGCAACTAGAGGATGGAAGGACCCTTGCTGATTACAAT 45898
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || |||||||||||
Sbjct 45897 ATTCAGAAAGAGTCCAC 45881
>seq48644
Length=2856
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || ||||| || || || || ||||| || || || ||||| ||
Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | ||| | || | | ||||| ||||| | || || ||
Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGA-TCCAGGACAAGGAAGGCATCCCACCGGA 1945
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| |||||| | || || ||||||||||| || || |||| || || | | ||| ||
Sbjct 1944 CCAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTA 1885
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| ||||| ||||| ||
Sbjct 1884 CAACATTCAAAAGGAGTCTAC 1864
>seq45117
Length=3449
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || ||||| || || || || ||||| || || || ||||| ||
Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | ||| | || | | ||||| ||||| | || || ||
Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGA-TCCAGGACAAGGAAGGCATCCCACCGGA 2538
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| |||||| | || || ||||||||||| || || |||| || || | | ||| ||
Sbjct 2537 CCAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTA 2478
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| ||||| ||||| ||
Sbjct 2477 CAACATTCAAAAGGAGTCTAC 2457
>seq184
Length=120086
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| |||||||| ||||| || ||||| || ||||| || || |||
Sbjct 5224 AAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCGAATCC 5283
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | ||| || ||||| ||||| | || |||||
Sbjct 5284 TCCGACACCATCGACAATGTGAAGGC-AAAGATCCAGGACAAGGAAGGAATTCCACCAGA 5342
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| || || |||| || ||||| || || || || || | || || | | ||||||
Sbjct 5343 CCAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCGATTA 5402
Query 23787 CAACATACAAAAAGAGTCCAC 23807
||| || || || || || ||
Sbjct 5403 CAATATCCAGAAGGAATCGAC 5423
>seq22012
Length=9549
Score = 91.5 bits (100), Expect = 1e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| |||||||| || | || || || || ||||| ||||| ||||| | |
Sbjct 6068 AATGCAGATATTCGTTAAGACTTTAACAGGGAAGACTATCACCCTCGAGGTTGAAAGCTC 6009
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| | || ||| | || | || | || ||||| || || | |||||||| |
Sbjct 6008 GGACACCATAGATAATGTCAAGGCGAAGA-TTCAGGACAAGGAGGGGATTCCGCCAGACC 5950
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | || || ||||| || || || || || || | ||| || || | |||||||
Sbjct 5949 AGCAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGACGGACATTGGCTGATTACA 5890
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || || || || ||
Sbjct 5889 ACATTCAGAAGGAATCAAC 5871
>seq35801
Length=5147
Score = 86.0 bits (94), Expect = 4e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||| || || | || || || || ||||| ||||| ||||| | |
Sbjct 129 AATGCAGATATTCGTCAAGACTTTGACAGGGAAGACCATCACCCTCGAGGTTGAAAGCTC 188
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| | || ||| | || | || | || ||||| || || | |||||||| |
Sbjct 189 GGACACCATAGATAATGTCAAGGCGAAGA-TTCAGGACAAGGAGGGGATTCCGCCAGACC 247
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | || || ||||| || || || || || || | ||| || || | |||||||
Sbjct 248 AGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGGACATTGGCTGATTACA 307
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || || || || ||
Sbjct 308 ACATTCAGAAGGAATCGAC 326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 336412909617752
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