Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq87 118 7e-22 seq9434 104 2e-17 seq48644 98.7 7e-16 seq45117 98.7 7e-16 seq184 98.7 7e-16 seq22012 91.5 1e-13 seq35801 86.0 4e-12 >seq87 Length=177581 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| |||||||| || || || | |||||||| | | Sbjct 55121 ATGCAGATTTTCGTCAAAACCCTTACGGGAAAGACCATTACGTTGGAAGTTGAGAGCTCT 55062 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || ||| || || || || | || ||||| || Sbjct 55061 GACACAATTGACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAG 55002 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||||||||| ||||| ||||| | | | || | | ||||| ||| Sbjct 55001 CAGAGATTGATCTTTGCCGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATAAC 54942 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||||||||| | ||||| ||| Sbjct 54941 ATCCAGAAAGAGTCCACCCTTCATTTGGTT 54912 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || ||||| || || || | ||||| || | || Sbjct 54893 ATGCAGATTTTCGTGAAGACCCTGACCGGAAAGACCATTACATTGGAAGTGGAGAGCTCG 54834 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || ||| || ||||| || | || |||||||| Sbjct 54833 GACACAATTGACAATGTGAAGGC-GAAGATTCAGGATAAAGAGGGAATTCCACCAGATCA 54775 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || || ||||| | | | || || | ||||| || Sbjct 54774 GCAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACATTGGCAGATTATAA 54715 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 54714 CATTCAAAAGGAGTCAAC 54697 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || || || || ||||| |||||||| | | Sbjct 54665 ATGCAAATCTTTGTGAAAACCCTCACTGGTAAGACAATAACTCTTGAAGTTGAGAGCTCA 54606 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||||| || || || ||| | |||||||| || Sbjct 54605 GACACCATTGACAATGTCAAGGC-AAAAATCCAAGATAAGGAGGGTATCCCGCCAGACCA 54547 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || || ||||| ||||| | || ||| | | || || || Sbjct 54546 GCAAAGACTCATCTTTGCGGGTAAGCAACTCGAAGATGGGCGTACTCTCGCAGACTATAA 54487 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 54486 CATTCAGAAGGAGTCCAC 54469 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || || || |||||||| ||||||||||| | | Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || || ||||| ||||| | || || || ||| Sbjct 55517 GACACAATTGACAACGTAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAA 55458 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| || ||| ||||||| | ||||| | | ||||| || Sbjct 55457 CAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAAT 55398 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 55397 ATCCAGAAGGAATCCAC 55381 >seq9434 Length=50679 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| ||||||||||| || || ||||| || ||||| || || || | Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||| ||| | || | |||||| || ||||||||| | || || || | Sbjct 45106 AGACACTATTGACAATGTCAAGGC-AAAAATCCAAGATAAAGAAGGTATCCCACCTGACC 45048 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || |||||||| || ||||| ||||| | || || ||| || |||| Sbjct 45047 AGCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTACA 44988 Query 23789 ACATACAAAAAGAGTCCACATTACAT 23814 | || || || ||||| ||| | ||| Sbjct 44987 ATATCCAGAAGGAGTCTACACTTCAT 44962 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || ||||| || |||||| | ||||| || | || Sbjct 45393 ATGCAGATTTTTGTCAAGACCCTGACCGGAAAGACCATCACTTTGGAAGTGGAGAGCTCG 45334 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || ||| || || || || | || ||||| ||| Sbjct 45333 GACACCATTGACAATGTAAAGGCGAAGATTCAGGATAAGGAGGGAATTCCACCAGACCAA 45274 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || || || ||||| | | | || |||| || || ||| Sbjct 45273 CAGAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGAAGGACATTAGCAGACTATAAC 45214 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| ||||| ||| | || || || Sbjct 45213 ATTCAAAAGGAGTCGACACTTCACTTGGT 45185 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || ||||| || | | Sbjct 45849 ATGCAGATATTCGTAAAGACCCTAACTGGCAAGACTATCACACTTGAAGTCGAGAGCTCA 45790 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | || ||||| || || | || |||||||| Sbjct 45789 GACACAATTGACAATGTCAAAGCTAAGA-TTCAAGACAAGGAGGGAATTCCCCCAGATCA 45731 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||||||||| ||||| ||||| | | | || | | ||||| || Sbjct 45730 GCAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGATGGAAGGACCCTTGCAGATTATAA 45671 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 45670 CATCCAGAAGGAATCCAC 45653 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || || ||||| ||||| ||||| | | Sbjct 46077 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTTGAAAGCTCT 46018 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| || || ||||| || || | || || || ||| Sbjct 46017 GACACAATTGACAACGTAAAAGCTAAGATCCAAGACAAGGAGGGAATTCCCCCTGACCAA 45958 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| || ||||| || || | | | || | | |||||||| Sbjct 45957 CAAAGACTTATCTTTGCCGGAAAGCAACTAGAGGATGGAAGGACCCTTGCTGATTACAAT 45898 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 45897 ATTCAGAAAGAGTCCAC 45881 >seq48644 Length=2856 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||| || || || || ||||| || || || ||||| || Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | ||||| ||||| | || || || Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGA-TCCAGGACAAGGAAGGCATCCCACCGGA 1945 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || ||||||||||| || || |||| || || | | ||| || Sbjct 1944 CCAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTA 1885 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| ||||| ||||| || Sbjct 1884 CAACATTCAAAAGGAGTCTAC 1864 >seq45117 Length=3449 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||| || || || || ||||| || || || ||||| || Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | ||||| ||||| | || || || Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGA-TCCAGGACAAGGAAGGCATCCCACCGGA 2538 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || ||||||||||| || || |||| || || | | ||| || Sbjct 2537 CCAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTA 2478 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| ||||| ||||| || Sbjct 2477 CAACATTCAAAAGGAGTCTAC 2457 >seq184 Length=120086 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || ||||| || ||||| || || ||| Sbjct 5224 AAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCGAATCC 5283 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | ||| || ||||| ||||| | || ||||| Sbjct 5284 TCCGACACCATCGACAATGTGAAGGC-AAAGATCCAGGACAAGGAAGGAATTCCACCAGA 5342 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || || |||| || ||||| || || || || || | || || | | |||||| Sbjct 5343 CCAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCGATTA 5402 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || || || || || || Sbjct 5403 CAATATCCAGAAGGAATCGAC 5423 >seq22012 Length=9549 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| |||||||| || | || || || || ||||| ||||| ||||| | | Sbjct 6068 AATGCAGATATTCGTTAAGACTTTAACAGGGAAGACTATCACCCTCGAGGTTGAAAGCTC 6009 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | || | || ||||| || || | |||||||| | Sbjct 6008 GGACACCATAGATAATGTCAAGGCGAAGA-TTCAGGACAAGGAGGGGATTCCGCCAGACC 5950 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || || || || || | ||| || || | ||||||| Sbjct 5949 AGCAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGACGGACATTGGCTGATTACA 5890 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || || || Sbjct 5889 ACATTCAGAAGGAATCAAC 5871 >seq35801 Length=5147 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || | || || || || ||||| ||||| ||||| | | Sbjct 129 AATGCAGATATTCGTCAAGACTTTGACAGGGAAGACCATCACCCTCGAGGTTGAAAGCTC 188 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | || | || ||||| || || | |||||||| | Sbjct 189 GGACACCATAGATAATGTCAAGGCGAAGA-TTCAGGACAAGGAGGGGATTCCGCCAGACC 247 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || || || || || | ||| || || | ||||||| Sbjct 248 AGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGGACATTGGCTGATTACA 307 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || || || Sbjct 308 ACATTCAGAAGGAATCGAC 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336412909617752