Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq270 156 4e-33 seq4197 134 1e-26 >seq270 Length=105985 Score = 156 bits (172), Expect = 4e-33 Identities = 543/840 (65%), Gaps = 8/840 (1%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| ||| |||| ||| || ||||||||||| || |||| ||| || ||| Sbjct 91501 TTCTGGTAGTCGCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAATGAGATAAGA 91560 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| |||||||||| || | | | ||| || ||||| || || || | | Sbjct 91561 TCCATCCAATCAAACGGGTTGGGTACACCGTACACCTTCCCACACCCAAGCGCAACCAAC 91620 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | | ||||||||||| || || |||| ||||| |||| | || || ||||| || Sbjct 91621 AGCCTATCAGCTACAAACTCAATGTACTCACTCATCAGTTTTCCATTCATCCCAATCAA- 91679 Query 4437 CTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | | || || ||||||| | |||||| | || || || || ||| | | || Sbjct 91680 CGCGCATGGCAGCGCGTCACAAATAAACTCCTTCTCGATCTCCACCGCATCTCTCACGAT 91739 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 |||||| | |||| || | || || | | | | | | ||||| ||||| Sbjct 91740 CCCTTTTACTCGGTCTTCAGGAAGCTTCTTCTTCAGGATTTCGTAGATCAAACAAGCAAA 91799 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 |||||| || || |||||||||||| || || ||||| || || || ||||| ||||| Sbjct 91800 ATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCTGGCAT 91859 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | ||| | ||||| ||||| |||| ||| || || || ||||| |||||||| Sbjct 91860 CAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATGCCTTC 91919 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTT 4735 ||| || || || || | ||| |||| || || | | |||||| Sbjct 91920 CACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGG---AGGAATCGATCCATCG 91976 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTT 4795 || ||||| | || || || | ||| || || |||| || |||| || | Sbjct 91977 CAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGCGTGGAAGAGGCG 92036 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 || || | ||| |||| || | || || ||||| ||||| |||||||| Sbjct 92037 GTGCTTCTCGTCGGAGTCCCGAATTAGCGTTTGAATGAGGAGGCTGTACATCTCAGAATG 92096 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || | || ||||| || || || ||| | ||| || | || || | || Sbjct 92097 GATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTCGGAGACCTGGATATC 92156 Query 4916 GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 || || ||| | | | ||| ||| || || ||||| ||| || || || || Sbjct 92157 ATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGAGGCGGCGAAGAAGGC 92216 Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAG-GCTTA-AGTTT-TTTCCAGTGGGGCAA 5032 | || ||||| || || | | ||||| | | ||| ||||| | |||||| | | Sbjct 92217 GAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTCCTCCCAGTGACGGAT 92276 Query 5033 ATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 ||||| ||||| ||| || || || | ||||| || || ||||| ||||| |||||||| Sbjct 92277 ATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACAT 92336 >seq4197 Length=36674 Score = 134 bits (148), Expect = 1e-26 Identities = 377/576 (65%), Gaps = 6/576 (1%) Strand=Plus/Plus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| || ||||| || ||||| |||||||| | | |||| ||||| || || |||| Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 ||| ||||| | |||| |||||| ||||||||||| ||| || ||||| ||||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAA 23538 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || ||||| ||| |||||| || |||| || |||| || || | | Sbjct 23539 GATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGA---TTCTGCGGAATC 23595 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| | ||||||| ||||| || | || |||| || | || |||| Sbjct 23596 AATCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTG 23655 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 || | || || | | |||| |||| || || | || ||||| ||||| Sbjct 23656 GAAGAGCCGGTGCTTCTCGGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTACAT 23715 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 |||||| || ||||| || || || ||||| || ||||| ||| | ||| || | || Sbjct 23716 TTCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAAC 23775 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || | || || || || | | | || ||| || || ||||| |||||| Sbjct 23776 CTGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGC 23835 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTTTT--TTCCA 5023 || || || | |||||||| ||||||| || || |||| ||| | ||| | ||| Sbjct 23836 GAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCCCA 23895 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || | | ||||| | | ||||| || || | ||||| ||||| ||||| || || Sbjct 23896 ATGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCCTT 23955 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || ||||| ||| || |||||||| ||||| Sbjct 23956 CTTATACATCTCCCATATGCGAGGATACTTGATCGG 23991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425032302298802