Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4197 105 9e-18 seq270 93.3 6e-14 seq381454 86.0 9e-12 >seq4197 Length=36674 Score = 105 bits (116), Expect = 9e-18 Identities = 395/616 (64%), Gaps = 5/616 (1%) Strand=Plus/Plus Query 46629 ACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 46688 ||| || ||||| || || | |||||| || | || || ||||| || || || || Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 46689 CCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAA 46748 |||||||| ||||| |||||||| ||||||||||| || ||| |||||| ||||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAA 23538 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 || ||||| || || || || || | | ||| || | | | || ||| Sbjct 23539 GATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCAAT 23598 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 ||| | | ||||| || || || || | ||| || | || || || || | || Sbjct 23599 CCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGAA 23658 Query 46869 GAGAAAGtttttttCATCACTA-TCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 ||| || || || || | ||| || || || | | ||| || ||||||| Sbjct 23659 GAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTACATTT 23717 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 | || || || || || || || ||||| || ||||| || | || || | || || Sbjct 23718 CAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACCT 23777 Query 46988 GTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047 | | ||| | || | ||| | |||||| ||| || || || || || | Sbjct 23778 GGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGCGA 23837 Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG---TTTATTCCAGT 47104 | || || | ||||| ||||| | || ||||| | ||| || || | ||| | Sbjct 23838 AGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCCCAAT 23897 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 | || ||||| ||| | || || || || || |||||||| || || || || || | Sbjct 23898 GACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCCTTCT 23957 Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 ||||||| | |||||| | |||| | |||||| || ||| |||| || ||||| Sbjct 23958 TATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGGATTGG 24017 Query 47225 TTGCAAGTATAGGTTC 47240 ||||| | ||| || Sbjct 24018 AGGCAAGGAGAGGCTC 24033 >seq270 Length=105985 Score = 93.3 bits (102), Expect = 6e-14 Identities = 376/587 (64%), Gaps = 9/587 (2%) Strand=Plus/Plus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 || ||||| ||||||||||| || | |||||| ||||| || | ||||| || || Sbjct 91786 ATCAAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAG 91845 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 || | || ||||| || || || ||||| ||||| |||| || ||| ||| || Sbjct 91846 GTCAATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAG 91905 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCAT 46801 ||||| |||||||| || ||||| ||||| | || ||| || | | | | | | Sbjct 91906 AAGAAGATGCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGA- 91964 Query 46802 TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 || ||||| | ||||| | ||||| || | || ||| || || || || | Sbjct 91965 -ATCGATCCATCGCAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTG 92023 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 | | ||||| || || || || || || || | || | || || | Sbjct 92024 CGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCCGAATTAGCGTTTGAATGAGGAGGCTGT 92083 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 |||| || ||||| ||||| |||| || ||||| || || || || | || || | Sbjct 92084 ACATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTCGG 92143 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTA 47040 | ||| | || | || | | ||| | | | ||||| || ||||| || Sbjct 92144 AGACCTGGATATC-ATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGAG 92202 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG---TTTA 47097 || || || || || | || || || |||| ||| || ||||| || || || Sbjct 92203 GCGGCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTCC 92262 Query 47098 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCT 47157 | ||||| | |||||||| | || ||| || || || || |||||||| || || || Sbjct 92263 TCCCAGTGACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCG 92322 Query 47158 GCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 ||||| || ||||| | ||| || | | |||||||| || || || Sbjct 92323 GCTTTCTTGTACATCTCCCAGATCTTGGGGTATTGGATTGGGAACAT 92369 >seq381454 Length=304 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| ||||| || ||||| ||||||||||||||| ||| || | | || Sbjct 125 GTACCAGCATTGAACAAGGTTGGAGAAGCATGAGTGAACCATCTTTGTGACATCAAATGA 66 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||| |||| | | |||||||| | ||| ||||| |||| ||| | ||||||| Sbjct 65 TATGTTTTAATAGCAGACTCTATATCATCCTTATGGATTCCAACAGAGACCCTCATCAAC 6 Query 77114 ATATG 77118 || || Sbjct 5 ATGTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709480286302080