Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq5412 365 6e-96 seq8546 286 4e-72 seq29420 203 4e-47 seq25216 183 4e-41 seq59 170 2e-37 seq8630 113 6e-20 seq2419 96.9 4e-15 seq2610 95.1 1e-14 seq490 91.5 2e-13 seq4835 86.0 8e-12 >seq5412 Length=31808 Score = 365 bits (404), Expect = 6e-96 Identities = 498/693 (72%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 183242 GGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCC 183300 |||||||| |||||||||| || | ||| | ||||| ||| | || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 183301 TTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTC 183360 ||| | ||||||||||| || || || || || || || ||||| ||| ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 183361 ATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTT 183420 | || |||||||| || ||||||||||| || ||| ||| || || || | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 183421 CACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCT 183480 ||||| ||||| || |||||||| ||||| | ||||| ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 183481 TACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGG 183540 || | || | || || |||||| | |||| || || |||||||||||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 183541 GAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTT 183600 ||| | || |||||| |||||||| |||||||| |||||| ||| || |||||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 183601 GCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGT 183660 || |||| || ||||| ||| || |||| || | ||| |||| ||| | ||||| Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 183661 ATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAAC 183720 ||||| || || || ||| || || |||| ||| |||| ||||| || ||||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 183721 ATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTC 183780 ||||| |||||||| || |||||| | || || |||||||| |||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 183781 AGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAG 183840 || ||| |||||| |||| || || || | | |||||||| || ||| Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 183841 TCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCT 183900 || || | ||||||| | | |||||||| |||||||| || || || || |||||| Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 183901 CATGGATACTTTGGTCGTCTGATCTTCCAGTAT 183933 ||||| || ||||| || | |||||||| ||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 184048 AACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTT 184107 || |||||||| || | ||||| ||||||||||||| | || || ||||| || || Sbjct 14594 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATT 14535 Query 184108 CTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCT 184167 | ||||| || ||||| |||||||| ||||| || |||||||||| ||||||||| Sbjct 14534 ATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCCCT 14475 Query 184168 CTCGACCTTGCTGC 184181 |||||||| || || Sbjct 14474 CTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 286 bits (316), Expect = 4e-72 Identities = 332/445 (75%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 183739 CACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCT 183798 |||||| | || || |||||||| ||||| || || | ||||||| ||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 183799 CTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTA 183857 |||| || || | | | | || | |||||||| || | | || || | ||||| Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086 Query 183858 CAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCG 183917 || || |||||||| || || || | || ||||| ||||||||||| || ||||| || Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 183918 TCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGC 183977 | |||||||| |||||| || ||| |||||| |||| | || |||||| | | ||| Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 183978 TTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCT 184037 |||||| || || || || ||||||||| || | ||| |||| ||||||||||||| ||| Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 184038 GAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTG 184097 || || || || |||||||| || | ||||| ||||||||||||| || || Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTG 12850 Query 184098 GGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCA 184157 ||| || || | ||||| ||| ||||| |||||||| ||||| || ||||||||||| Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 184158 CAACTTCCCTCTCGACCTTGCTGCT 184182 ||||||| ||| ||||| |||||| Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 203 bits (224), Expect = 4e-47 Identities = 261/360 (73%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 183309 TGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGG 183368 ||||||||| || || || || || || || ||||| ||| |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 183369 AAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTA 183428 |||||| || |||||||||| || |||| |||| || || || | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 183429 TCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACT 183488 ||| || |||||||| ||||| | ||||| ||| | || || ||||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 183489 CGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTC 183548 || || |||||| | |||| || || ||||||||||||||||||||| | Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 183549 TTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGC 183608 || |||||| |||||||| |||||||| |||||| ||| | |||||||| ||||| Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 183609 AACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCT 183668 || || | ||| || |||| || | |||||||| ||| |||||||||||| || Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq25216 Length=8180 Score = 183 bits (202), Expect = 4e-41 Identities = 191/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 183559 GGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTC 183618 |||||||| |||||||| | |||| ||| || |||||||| ||||| || ||||| Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 183619 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGT 183678 ||| || |||| || | |||||||| ||| |||||||||||| || || || | Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 183679 GGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTC 183738 || || || |||| ||| |||| ||||| | |||||||||||||| |||||||| || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 183739 CACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCT 183798 |||||| | || || | |||||| ||||| || || || |||||||| ||||| |||||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014 Query 183799 CTGGTTACTTC 183809 |||| || || Sbjct 7013 TTGGTAACCTC 7003 >seq59 Length=339703 Score = 170 bits (188), Expect = 2e-37 Identities = 189/252 (75%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 183654 TGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGA 183713 |||||||||||| || || | ||| || || |||| ||| |||| ||||| || || Sbjct 52314 TGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGA 52373 Query 183714 GCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTC 183773 |||||||||||| |||||||| || |||||| | | || |||||||| ||||| || || Sbjct 52374 GCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTC 52433 Query 183774 TCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGA 183833 || ||||||| ||||| |||||| |||| || || || || | |||||||| || Sbjct 52434 CCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACCACAGA 52493 Query 183834 GTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGT 183893 ||| || || | ||||||| ||| |||||||| |||||||| || || ||||| Sbjct 52494 AAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAATATTGT 52553 Query 183894 CGCTGCTCATGG 183905 ||| ||||||| Sbjct 52554 AGCTACTCATGG 52565 >seq8630 Length=23577 Score = 113 bits (124), Expect = 6e-20 Identities = 105/132 (80%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGT-CGCTGCTCATGGATACTT 183911 |||||||| || |||||||| || || || || || || || |||||||||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 183912 TGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCT 183971 |||||| | |||||||| |||||| || ||||||||||||||| | || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 183972 TGCTGCTTGGCC 183983 || |||||||| Sbjct 7617 AGCCGCTTGGCC 7628 >seq2419 Length=47573 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/146 (77%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 171056 TGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAG-TGGTTCTGTTGATCAATCCGATC 171114 ||||||||| || ||||||| |||| | |||| ||| |||||||| ||||| ||| Sbjct 26311 TGGTGCTTGCTCAACCTGTGTTGGGGAG-TTGATCTCTGGATCTGTTGACCAATCA-ATC 26368 Query 171115 AATCTTTCCTTGATGATGATCAGATTGAATCAGG-TTTCATTCTGACCTGCGTCTCATAT 171173 |||| |||||||||||||| || | ||||| ||| | ||| ||||| ||||||||||| Sbjct 26369 AATCCTTCCTTGATGATGACCA-ACTGAATTAGGCGTACATACTGACTTGCGTCTCATAC 26427 Query 171174 CCTACAAGTGATTGTGTAATCTTGAC 171199 |||| | ||||||| || | ||| Sbjct 26428 CCTATGGGATATTGTGTGATTTAGAC 26453 >seq2610 Length=55653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048 |||| ||| ||| || | || | ||||| | || || || ||| | || |||| Sbjct 39267 CTGATGATGTATACATCTTGGACTCAGCTGAGAATGCTGGCTTGGATCTTCCATACTCGT 39326 Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108 | || |||||||||||||| |||||||||||||| | ||| || || || || | Sbjct 39327 GCCGAGCTGGTGCTTGTTCAACCTGTGCTGGGAAGCTGATTTCTGGATCAGTCGACCAGT 39386 Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGATTGAATCA-GGTTTCATTCTGACCTGCGTC 171167 | || || |||||||||||||| || ||| ||||| || | | | ||||| |||||| Sbjct 39387 CAGACGGGTCCTTCCTTGATGATGACCAAATT-AATCAGGGCTACGTACTGACTTGCGTC 39445 Query 171168 TCATATCCTACAAGTGATTGTGTAAT 171193 | || ||||| | |||||||| || Sbjct 39446 GCGTACCCTACCGGAGATTGTGTGAT 39471 >seq490 Length=82263 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 183945 CAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTAC 184004 || |||| ||||| | | | ||| | |||||||| || || || || |||||||| Sbjct 21387 CATTTCTAGTTCTTTACGTGTTTTCTTAACTGCTTGGTTTGTAGTAGGTATATGGTTTAC 21446 Query 184005 TGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCAT 184064 |||| | ||| |||| |||||| |||||||||| || || ||||| || ||||| | | Sbjct 21447 TGCTTTAGGTATTAGAACTATGACATTTAACCTAAACGGCTTTAATTTTAACCAATTTGT 21506 Query 184065 CATTGATGGTCAAGG 184079 |||||| ||||||| Sbjct 21507 AATTGATAGTCAAGG 21521 >seq4835 Length=43218 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/135 (74%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| || |||||||| || || || || || || || ||||||||||| || ||| Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCT----CTTCACTTCTT 183968 || | | |||||||| |||||| || ||||| ||||||||| | || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 183969 CCTTGCTGCTTGGCC 183983 | || |||||||| Sbjct 9179 ATTAGCCGCTTGGCC 9193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619056515567280