Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_031235.1
Length=194437
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 365 6e-96
seq8546 286 4e-72
seq29420 203 4e-47
seq25216 183 4e-41
seq59 170 2e-37
seq8630 113 6e-20
seq2419 96.9 4e-15
seq2610 95.1 1e-14
seq490 91.5 2e-13
seq4835 86.0 8e-12
>seq5412
Length=31808
Score = 365 bits (404), Expect = 6e-96
Identities = 498/693 (72%), Gaps = 8/693 (1%)
Strand=Plus/Minus
Query 183242 GGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCC 183300
|||||||| |||||||||| || | ||| | ||||| ||| | || || | |||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225
Query 183301 TTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTC 183360
||| | ||||||||||| || || || || || || || ||||| ||| ||| || ||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 183361 ATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTT 183420
| || |||||||| || ||||||||||| || ||| ||| || || || |
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 183421 CACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCT 183480
||||| ||||| || |||||||| ||||| | ||||| ||| | || || ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 183481 TACCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGG 183540
|| | || | || || |||||| | |||| || || ||||||||||||||||||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 183541 GAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTT 183600
||| | || |||||| |||||||| |||||||| |||||| ||| || ||||||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 183601 GCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGT 183660
|| |||| || ||||| ||| || |||| || | ||| |||| ||| | |||||
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 183661 ATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAAC 183720
||||| || || || ||| || || |||| ||| |||| ||||| || |||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 183721 ATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTC 183780
||||| |||||||| || |||||| | || || |||||||| |||| || | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 183781 AGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAG 183840
|| ||| |||||| |||| || || || | | |||||||| || |||
Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 183841 TCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCT 183900
|| || | ||||||| | | |||||||| |||||||| || || || || ||||||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 183901 CATGGATACTTTGGTCGTCTGATCTTCCAGTAT 183933
||||| || ||||| || | |||||||| |||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 184048 AACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTT 184107
|| |||||||| || | ||||| ||||||||||||| | || || ||||| || ||
Sbjct 14594 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATT 14535
Query 184108 CTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCT 184167
| ||||| || ||||| |||||||| ||||| || |||||||||| |||||||||
Sbjct 14534 ATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCCCT 14475
Query 184168 CTCGACCTTGCTGC 184181
|||||||| || ||
Sbjct 14474 CTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 286 bits (316), Expect = 4e-72
Identities = 332/445 (75%), Gaps = 6/445 (1%)
Strand=Plus/Minus
Query 183739 CACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCT 183798
|||||| | || || |||||||| ||||| || || | ||||||| ||||| ||||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 183799 CTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTA 183857
|||| || || | | | | || | |||||||| || | | || || | |||||
Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086
Query 183858 CAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCG 183917
|| || |||||||| || || || | || ||||| ||||||||||| || ||||| ||
Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026
Query 183918 TCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGC 183977
| |||||||| |||||| || ||| |||||| |||| | || |||||| | | |||
Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966
Query 183978 TTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCT 184037
|||||| || || || || ||||||||| || | ||| |||| ||||||||||||| |||
Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906
Query 184038 GAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTG 184097
|| || || || |||||||| || | ||||| ||||||||||||| || ||
Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTG 12850
Query 184098 GGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCA 184157
||| || || | ||||| ||| ||||| |||||||| ||||| || |||||||||||
Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790
Query 184158 CAACTTCCCTCTCGACCTTGCTGCT 184182
||||||| ||| ||||| ||||||
Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765
>seq29420
Length=7120
Score = 203 bits (224), Expect = 4e-47
Identities = 261/360 (73%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 183309 TGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGG 183368
||||||||| || || || || || || || ||||| ||| |||| || || | | ||
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474
Query 183369 AAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTA 183428
|||||| || |||||||||| || |||| |||| || || || | ||||| ||
Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534
Query 183429 TCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACT 183488
||| || |||||||| ||||| | ||||| ||| | || || ||||||||||| | ||
Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594
Query 183489 CGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTC 183548
|| || |||||| | |||| || || ||||||||||||||||||||| |
Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654
Query 183549 TTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGC 183608
|| |||||| |||||||| |||||||| |||||| ||| | |||||||| |||||
Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714
Query 183609 AACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCT 183668
|| || | ||| || |||| || | |||||||| ||| |||||||||||| ||
Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq25216
Length=8180
Score = 183 bits (202), Expect = 4e-41
Identities = 191/251 (76%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 183559 GGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTC 183618
|||||||| |||||||| | |||| ||| || |||||||| ||||| || |||||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 183619 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGT 183678
||| || |||| || | |||||||| ||| |||||||||||| || || || |
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 183679 GGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTC 183738
|| || || |||| ||| |||| ||||| | |||||||||||||| |||||||| ||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 183739 CACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCT 183798
|||||| | || || | |||||| ||||| || || || |||||||| ||||| ||||||
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014
Query 183799 CTGGTTACTTC 183809
|||| || ||
Sbjct 7013 TTGGTAACCTC 7003
>seq59
Length=339703
Score = 170 bits (188), Expect = 2e-37
Identities = 189/252 (75%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 183654 TGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGA 183713
|||||||||||| || || | ||| || || |||| ||| |||| ||||| || ||
Sbjct 52314 TGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGA 52373
Query 183714 GCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTC 183773
|||||||||||| |||||||| || |||||| | | || |||||||| ||||| || ||
Sbjct 52374 GCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTC 52433
Query 183774 TCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGA 183833
|| ||||||| ||||| |||||| |||| || || || || | |||||||| ||
Sbjct 52434 CCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACCACAGA 52493
Query 183834 GTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGT 183893
||| || || | ||||||| ||| |||||||| |||||||| || || |||||
Sbjct 52494 AAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAATATTGT 52553
Query 183894 CGCTGCTCATGG 183905
||| |||||||
Sbjct 52554 AGCTACTCATGG 52565
>seq8630
Length=23577
Score = 113 bits (124), Expect = 6e-20
Identities = 105/132 (80%), Gaps = 1/132 (1%)
Strand=Plus/Plus
Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGT-CGCTGCTCATGGATACTT 183911
|||||||| || |||||||| || || || || || || || |||||||||||| || ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 183912 TGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCT 183971
|||||| | |||||||| |||||| || ||||||||||||||| | || ||||| |
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616
Query 183972 TGCTGCTTGGCC 183983
|| ||||||||
Sbjct 7617 AGCCGCTTGGCC 7628
>seq2419
Length=47573
Score = 96.9 bits (106), Expect = 4e-15
Identities = 113/146 (77%), Gaps = 5/146 (3%)
Strand=Plus/Plus
Query 171056 TGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAG-TGGTTCTGTTGATCAATCCGATC 171114
||||||||| || ||||||| |||| | |||| ||| |||||||| ||||| |||
Sbjct 26311 TGGTGCTTGCTCAACCTGTGTTGGGGAG-TTGATCTCTGGATCTGTTGACCAATCA-ATC 26368
Query 171115 AATCTTTCCTTGATGATGATCAGATTGAATCAGG-TTTCATTCTGACCTGCGTCTCATAT 171173
|||| |||||||||||||| || | ||||| ||| | ||| ||||| |||||||||||
Sbjct 26369 AATCCTTCCTTGATGATGACCA-ACTGAATTAGGCGTACATACTGACTTGCGTCTCATAC 26427
Query 171174 CCTACAAGTGATTGTGTAATCTTGAC 171199
|||| | ||||||| || | |||
Sbjct 26428 CCTATGGGATATTGTGTGATTTAGAC 26453
>seq2610
Length=55653
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/206 (71%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048
|||| ||| ||| || | || | ||||| | || || || ||| | || ||||
Sbjct 39267 CTGATGATGTATACATCTTGGACTCAGCTGAGAATGCTGGCTTGGATCTTCCATACTCGT 39326
Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108
| || |||||||||||||| |||||||||||||| | ||| || || || || |
Sbjct 39327 GCCGAGCTGGTGCTTGTTCAACCTGTGCTGGGAAGCTGATTTCTGGATCAGTCGACCAGT 39386
Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGATTGAATCA-GGTTTCATTCTGACCTGCGTC 171167
| || || |||||||||||||| || ||| ||||| || | | | ||||| ||||||
Sbjct 39387 CAGACGGGTCCTTCCTTGATGATGACCAAATT-AATCAGGGCTACGTACTGACTTGCGTC 39445
Query 171168 TCATATCCTACAAGTGATTGTGTAAT 171193
| || ||||| | |||||||| ||
Sbjct 39446 GCGTACCCTACCGGAGATTGTGTGAT 39471
>seq490
Length=82263
Score = 91.5 bits (100), Expect = 2e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 183945 CAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTAC 184004
|| |||| ||||| | | | ||| | |||||||| || || || || ||||||||
Sbjct 21387 CATTTCTAGTTCTTTACGTGTTTTCTTAACTGCTTGGTTTGTAGTAGGTATATGGTTTAC 21446
Query 184005 TGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCAT 184064
|||| | ||| |||| |||||| |||||||||| || || ||||| || ||||| | |
Sbjct 21447 TGCTTTAGGTATTAGAACTATGACATTTAACCTAAACGGCTTTAATTTTAACCAATTTGT 21506
Query 184065 CATTGATGGTCAAGG 184079
|||||| |||||||
Sbjct 21507 AATTGATAGTCAAGG 21521
>seq4835
Length=43218
Score = 86.0 bits (94), Expect = 8e-12
Identities = 100/135 (74%), Gaps = 4/135 (3%)
Strand=Plus/Plus
Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912
||||||| || |||||||| || || || || || || || ||||||||||| || |||
Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118
Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCT----CTTCACTTCTT 183968
|| | | |||||||| |||||| || ||||| ||||||||| | || |||||
Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178
Query 183969 CCTTGCTGCTTGGCC 183983
| || ||||||||
Sbjct 9179 ATTAGCCGCTTGGCC 9193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 619056515567280
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