Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 385 5e-102
seq8546 259 5e-64
seq29420 212 7e-50
seq25216 197 2e-45
seq59 179 4e-40
seq3927 134 2e-26
seq2610 105 7e-18
>seq5412
Length=31808
Score = 385 bits (426), Expect = 5e-102
Identities = 502/692 (73%), Gaps = 8/692 (1%)
Strand=Plus/Minus
Query 163974 GGTTCGGCGTCCTGATGATTCCCTGCCTGCTGGCAGCGAC-TACATGTTTCATCATCGCC 164032
|||| ||||| |||||||||| | | || | || || | | | ||| || || |||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTT-ATTATAGCC 15225
Query 164033 TTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTC 164092
||||| | ||||||||| || || || ||||| || || ||||| || ||| || ||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 164093 ATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTG 164152
| || |||||||| || ||||||||||| |||| | ||| | ||||| ||| ||
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 164153 CACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCT 164212
||||| || || || |||||||| ||| | | || |||||| | ||||| ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 164213 TTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGG 164272
| | || |||| || |||||| | |||| | | |||||||||||||||||||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 164273 GAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTC 164332
|||||| || |||||| |||||||| ||||||||| || || || || || |||||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 164333 GCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCA 164392
|| | || | ||| || ||| || |||| || | ||| |||| || ||| |||
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 164393 ATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAAC 164452
|||||||| || || ||||| || ||||||| |||| | || ||||||||||||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 164453 ATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTC 164512
||||| |||||||| || || ||| | |||||||| ||||| || | ||| | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 164513 AGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAG 164572
|| ||| ||||| |||| || || || | | || ||||| ||||||||
Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 164573 TCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCT 164632
|| || | ||||||| | ||||||| || ||||| || || || ||||| || |||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 164633 CACGGTTACTTTGGTCGTCTGATTTTCCAATA 164664
|| ||||| ||||| || | || ||||||||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 164778 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACG 164837
|||| |||||||| || | | ||| |||| |||||||| | || || ||||| ||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 164838 TTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 164897
|| | ||||| || || || |||||||| ||||| || |||||||||| |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 164898 CTCTCGACCTTGCTGC 164913
|||||||||| || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 259 bits (286), Expect = 5e-64
Identities = 324/444 (73%), Gaps = 4/444 (1%)
Strand=Plus/Minus
Query 164471 CATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCG 164530
|| ||| | |||||||| ||||| || ||||| || | ||||||| ||||| |||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 164531 CTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTAC 164590
|||| || ||| || | | || ||||| |||||| | ||| || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 164591 AAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGT 164650
| |||||||| || || ||||| | || || || || ||||| ||||| ||||| ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 164651 CTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCA 164710
| || |||||||| ||| |||||| | || | ||| | || |||||| | | ||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 164711 TGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTC 164770
|||||||| || ||||| ||||||||| || | || |||| || |||||||| | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 164771 AACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGG 164830
||||| ||||| |||||||| || | | ||| |||| |||||||| | | |||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAT----TGG 12849
Query 164831 GCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 164890
|| || || | ||||| ||| || || |||||||| ||||| || |||||||||||
Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789
Query 164891 AACTTCCCTCTCGACCTTGCTGCT 164914
||||||| ||| ||||| ||||||
Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765
>seq29420
Length=7120
Score = 212 bits (234), Expect = 7e-50
Identities = 263/360 (73%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 164041 TGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGG 164100
||||||||| || || || ||||| || || ||||| || |||| || || | | ||
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474
Query 164101 AAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTA 164160
|||||| || |||||||||| |||| || ||||| ||||| ||| ||||||| ||
Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534
Query 164161 CCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACT 164220
|| || |||||||| ||| | | || |||||| | ||||| |||||||||| | ||
Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594
Query 164221 CGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTC 164280
||| || |||||| | |||| | | |||||||||||||||||||||||||
Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654
Query 164281 TTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGC 164340
|| |||||| |||||||| ||||||||| || || || || | |||||| || || ||
Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714
Query 164341 GAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCT 164400
| | | | ||| || |||| || | |||||||| || ||||||| ||||||||
Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq25216
Length=8180
Score = 197 bits (218), Expect = 2e-45
Identities = 216/286 (76%), Gaps = 1/286 (0%)
Strand=Plus/Minus
Query 164289 TTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAG 164348
|||||||||| ||||||||| | || || || |||||||| || || || | ||| |
Sbjct 7255 TTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTG 7196
Query 164349 TGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCT 164408
| ||| || |||| || | |||||||| || ||||||| |||||||| || || |
Sbjct 7195 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 7136
Query 164409 CTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCT 164468
|||| || ||||||| |||| | || |||||| |||||||||||||||| |||||||| |
Sbjct 7135 CTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCAT 7076
Query 164469 TCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTT 164528
| || ||| | ||||||| ||||| || ||||| || || |||||||| ||||| ||||
Sbjct 7075 TTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 7016
Query 164529 CGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTC 164574
| |||| || || | | | || || ||||| ||||||| ||
Sbjct 7015 CTTTGGTAACCTC-GAGTTTGATCAGGAAACCACATAAAATGAATC 6971
>seq59
Length=339703
Score = 179 bits (198), Expect = 4e-40
Identities = 195/259 (75%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 164381 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAG 164440
|| ||||||| |||||||| || | ||||| || ||||||| |||| | || |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 164441 GCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGC 164500
||||||||||||||||| |||||||| || || ||| | ||||||| ||||| || |||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 164501 GGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACC 164560
|| || || ||||||| ||||| ||||| |||| || || || || | || |||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 164561 ACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAAC 164620
|| |||||||| || || | ||||||| ||||||||| || ||||| || || ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 164621 ATCGTTGCCGCTCACGGTT 164639
|| || || |||| ||||
Sbjct 52549 ATTGTAGCTACTCATGGTT 52567
>seq3927
Length=49767
Score = 134 bits (148), Expect = 2e-26
Identities = 184/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 165441 TGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTT 165500
||||||||||| || ||||| || || |||| ||| |||||||| ||| | || || |||
Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066
Query 165501 GAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTAT 165559
||||| || ||| || || | | || ||||| ||||| || || || | |||||| ||
Sbjct 26067 GAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125
Query 165560 TGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGC 165619
||| | || ||| || ||||| || ||||| || || || || |||||||| ||
Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185
Query 165620 ACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAA 165679
|| || || || ||| | || || |||||| | ||||| | |||||||| |||||
Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244
Query 165680 CTGGACGCTGAAT 165692
||||| |||||
Sbjct 26245 TTGGACATTGAAT 26257
>seq2610
Length=55653
Score = 105 bits (116), Expect = 7e-18
Identities = 158/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGA-CATCAACTACTCGTGTCGTGCAGG 161613
||||| | ||| |||||||| | || || |||| | || | |||||||| || || ||
Sbjct 39278 TACATCTTGGACTCAGCTGAGAATGCTGGCTTGGATCTTCCA-TACTCGTGCCGAGCTGG 39336
Query 161614 CGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTC 161673
|||||||| | || || || || || | ||||| | || ||||| ||| |||
Sbjct 39337 TGCTTGTTCAACCTGTGCTGGGAAGCTGATTTCTGGATCAGTCGACCAGTCAGACGGGTC 39396
Query 161674 CTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCAC 161733
|||||| || ||||||||||| || || | | | |||||||| || | || || ||
Sbjct 39397 CTTCCTTGATGATGACCAAATTAATCAGGGCTACGTACTGACTTGCGTCGCGTACCCTAC 39456
Query 161734 GAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTGTA 161775
| |||||||||||| | ||| | ||||||| ||||| ||
Sbjct 39457 CGGAGATTGTGTGATTCATACTCACAAAGAAGGTGAACTCTA 39498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 554952606256080
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