Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq5412 385 5e-102 seq8546 259 5e-64 seq29420 212 7e-50 seq25216 197 2e-45 seq59 179 4e-40 seq3927 134 2e-26 seq2610 105 7e-18 >seq5412 Length=31808 Score = 385 bits (426), Expect = 5e-102 Identities = 502/692 (73%), Gaps = 8/692 (1%) Strand=Plus/Minus Query 163974 GGTTCGGCGTCCTGATGATTCCCTGCCTGCTGGCAGCGAC-TACATGTTTCATCATCGCC 164032 |||| ||||| |||||||||| | | || | || || | | | ||| || || ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTT-ATTATAGCC 15225 Query 164033 TTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTC 164092 ||||| | ||||||||| || || || ||||| || || ||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 164093 ATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTG 164152 | || |||||||| || ||||||||||| |||| | ||| | ||||| ||| || Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 164153 CACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCT 164212 ||||| || || || |||||||| ||| | | || |||||| | ||||| |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 164213 TTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGG 164272 | | || |||| || |||||| | |||| | | ||||||||||||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 164273 GAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTC 164332 |||||| || |||||| |||||||| ||||||||| || || || || || ||||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 164333 GCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCA 164392 || | || | ||| || ||| || |||| || | ||| |||| || ||| ||| Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 164393 ATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAAC 164452 |||||||| || || ||||| || ||||||| |||| | || |||||||||||||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 164453 ATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTC 164512 ||||| |||||||| || || ||| | |||||||| ||||| || | ||| | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 164513 AGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAG 164572 || ||| ||||| |||| || || || | | || ||||| |||||||| Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 164573 TCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCT 164632 || || | ||||||| | ||||||| || ||||| || || || ||||| || ||| Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 164633 CACGGTTACTTTGGTCGTCTGATTTTCCAATA 164664 || ||||| ||||| || | || |||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 164778 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACG 164837 |||| |||||||| || | | ||| |||| |||||||| | || || ||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 164838 TTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 164897 || | ||||| || || || |||||||| ||||| || |||||||||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 164898 CTCTCGACCTTGCTGC 164913 |||||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 259 bits (286), Expect = 5e-64 Identities = 324/444 (73%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 164471 CATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCG 164530 || ||| | |||||||| ||||| || ||||| || | ||||||| ||||| ||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 164531 CTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTAC 164590 |||| || ||| || | | || ||||| |||||| | ||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 164591 AAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGT 164650 | |||||||| || || ||||| | || || || || ||||| ||||| ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 164651 CTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCA 164710 | || |||||||| ||| |||||| | || | ||| | || |||||| | | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 164711 TGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTC 164770 |||||||| || ||||| ||||||||| || | || |||| || |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 164771 AACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGG 164830 ||||| ||||| |||||||| || | | ||| |||| |||||||| | | ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAT----TGG 12849 Query 164831 GCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 164890 || || || | ||||| ||| || || |||||||| ||||| || ||||||||||| Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 164891 AACTTCCCTCTCGACCTTGCTGCT 164914 ||||||| ||| ||||| |||||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 212 bits (234), Expect = 7e-50 Identities = 263/360 (73%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 164041 TGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGG 164100 ||||||||| || || || ||||| || || ||||| || |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 164101 AAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTA 164160 |||||| || |||||||||| |||| || ||||| ||||| ||| ||||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 164161 CCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACT 164220 || || |||||||| ||| | | || |||||| | ||||| |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 164221 CGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTC 164280 ||| || |||||| | |||| | | ||||||||||||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 164281 TTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGC 164340 || |||||| |||||||| ||||||||| || || || || | |||||| || || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 164341 GAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCT 164400 | | | | ||| || |||| || | |||||||| || ||||||| |||||||| Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq25216 Length=8180 Score = 197 bits (218), Expect = 2e-45 Identities = 216/286 (76%), Gaps = 1/286 (0%) Strand=Plus/Minus Query 164289 TTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAG 164348 |||||||||| ||||||||| | || || || |||||||| || || || | ||| | Sbjct 7255 TTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTG 7196 Query 164349 TGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCT 164408 | ||| || |||| || | |||||||| || ||||||| |||||||| || || | Sbjct 7195 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 7136 Query 164409 CTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCT 164468 |||| || ||||||| |||| | || |||||| |||||||||||||||| |||||||| | Sbjct 7135 CTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCAT 7076 Query 164469 TCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTT 164528 | || ||| | ||||||| ||||| || ||||| || || |||||||| ||||| |||| Sbjct 7075 TTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 7016 Query 164529 CGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTC 164574 | |||| || || | | | || || ||||| ||||||| || Sbjct 7015 CTTTGGTAACCTC-GAGTTTGATCAGGAAACCACATAAAATGAATC 6971 >seq59 Length=339703 Score = 179 bits (198), Expect = 4e-40 Identities = 195/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 164381 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAG 164440 || ||||||| |||||||| || | ||||| || ||||||| |||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 164441 GCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGC 164500 ||||||||||||||||| |||||||| || || ||| | ||||||| ||||| || ||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 164501 GGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACC 164560 || || || ||||||| ||||| ||||| |||| || || || || | || ||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 164561 ACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAAC 164620 || |||||||| || || | ||||||| ||||||||| || ||||| || || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 164621 ATCGTTGCCGCTCACGGTT 164639 || || || |||| |||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq3927 Length=49767 Score = 134 bits (148), Expect = 2e-26 Identities = 184/253 (73%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 165441 TGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTT 165500 ||||||||||| || ||||| || || |||| ||| |||||||| ||| | || || ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 165501 GAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTAT 165559 ||||| || ||| || || | | || ||||| ||||| || || || | |||||| || Sbjct 26067 GAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125 Query 165560 TGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGC 165619 ||| | || ||| || ||||| || ||||| || || || || |||||||| || Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185 Query 165620 ACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAA 165679 || || || || ||| | || || |||||| | ||||| | |||||||| ||||| Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244 Query 165680 CTGGACGCTGAAT 165692 ||||| ||||| Sbjct 26245 TTGGACATTGAAT 26257 >seq2610 Length=55653 Score = 105 bits (116), Expect = 7e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGA-CATCAACTACTCGTGTCGTGCAGG 161613 ||||| | ||| |||||||| | || || |||| | || | |||||||| || || || Sbjct 39278 TACATCTTGGACTCAGCTGAGAATGCTGGCTTGGATCTTCCA-TACTCGTGCCGAGCTGG 39336 Query 161614 CGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTC 161673 |||||||| | || || || || || | ||||| | || ||||| ||| ||| Sbjct 39337 TGCTTGTTCAACCTGTGCTGGGAAGCTGATTTCTGGATCAGTCGACCAGTCAGACGGGTC 39396 Query 161674 CTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCAC 161733 |||||| || ||||||||||| || || | | | |||||||| || | || || || Sbjct 39397 CTTCCTTGATGATGACCAAATTAATCAGGGCTACGTACTGACTTGCGTCGCGTACCCTAC 39456 Query 161734 GAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTGTA 161775 | |||||||||||| | ||| | ||||||| ||||| || Sbjct 39457 CGGAGATTGTGTGATTCATACTCACAAAGAAGGTGAACTCTA 39498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554952606256080