Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq5412 351 1e-91 seq29420 208 9e-49 seq8546 201 1e-46 seq25216 176 5e-39 seq59 147 3e-30 seq8630 93.3 5e-14 >seq5412 Length=31808 Score = 351 bits (388), Expect = 1e-91 Identities = 492/691 (71%), Gaps = 6/691 (1%) Strand=Plus/Minus Query 169398 GGTTCGGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCT 169457 |||| ||||| ||||||| || | | || | ||||| | || || || |||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTTATTATAGCCT 15224 Query 169458 TCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGA 169517 |||| | |||||| || || || || || || || || ||||| ||| ||| ||||| Sbjct 15223 TCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTC 15164 Query 169518 TGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTC 169577 | || || ||||| || ||||||||||| || | | ||| || || ||| | | Sbjct 15163 TTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGC 15104 Query 169578 ACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTT 169637 |||| ||||| || |||||||| ||| | | ||||||||||| ||||| |||||||| | Sbjct 15103 ACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCAT 15044 Query 169638 TCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGG 169697 | || |||| || |||||| | | || | | |||||||||||||||||||| Sbjct 15043 ATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGG 14984 Query 169698 AATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTG 169757 || | | ||||||||||||||||||||||| |||||| || || || || |||| Sbjct 14983 AACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTG 14924 Query 169758 CGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTA 169817 || | || | ||||||||| || ||||||| |||| |||| || ||| | | || Sbjct 14923 CGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGTA 14864 Query 169818 TGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACA 169877 ||||||| || || || || || || |||| |||| | || ||||| ||||||||||||| Sbjct 14863 TGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACA 14804 Query 169878 TCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTA 169937 |||| |||||||| || |||||| | || || || || || || | || | || || | Sbjct 14803 TCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTCA 14744 Query 169938 GCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGT 169997 | ||| ||| | || || |||||| | || | |||||||| || || || | Sbjct 14743 G------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAAT 14690 Query 169998 CCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTC 170057 | || | ||||||| | | |||||||| |||||||| || || ||||| || |||| Sbjct 14689 CTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCTC 14630 Query 170058 ACGGTTACTTCGGTCGCCTGATCTTCCAATA 170088 | ||||| || || || | ||||||||||| Sbjct 14629 ATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 170202 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACG 170261 |||| |||||||| || | | ||| |||| |||||||| | || || ||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 170262 TTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 170321 || | ||||| || ||||| |||||||| ||||| || |||||||||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 170322 CTCTCGACCTCGCTGC 170337 |||||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq29420 Length=7120 Score = 208 bits (230), Expect = 9e-49 Identities = 262/360 (73%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 169465 TGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGG 169524 |||||| || || || || || || || || ||||| ||| |||| ||||| | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 169525 TAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTA 169584 ||||| || |||||||||| || | || |||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 169585 TCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACT 169644 ||| || |||||||| ||| | | ||||||||||| ||||| |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 169645 GGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTC 169704 ||| || |||||| | | || | | |||||||||||||||||||||| | Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 169705 CTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGC 169764 | ||||||||||||||||||||||| |||||| || || | ||| |||||||| || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 169765 CTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCT 169824 | || ||||| || ||||||| |||| ||||| || ||||| | ||||||||| Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq8546 Length=31398 Score = 201 bits (222), Expect = 1e-46 Identities = 311/444 (70%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 169895 CACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGC 169954 |||||| | || || || || || || || || || | || || | ||||| ||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 169955 CTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTAC 170014 | || || || ||| | || | |||||||| || || | ||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 170015 AAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGC 170074 | || |||||||| || || || | || || || || ||||| ||||| || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 170075 CTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCA 170134 | ||||||||||| ||| |||||| | || | ||| | || |||||| | | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 170135 TGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTG 170194 |||||||| || || || ||||| || || | ||| | || ||||| || | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 170195 AACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGG 170254 ||||| ||||| |||||||| || | | ||| |||| |||||||| || ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849 Query 170255 GCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 170314 || || || | ||||| ||| ||||| |||||||| ||||| || ||||||||||| Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 170315 AACTTCCCTCTCGACCTCGCTGCT 170338 ||||||| ||| ||||| |||||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 176 bits (194), Expect = 5e-39 Identities = 203/272 (75%), Gaps = 1/272 (0%) Strand=Plus/Minus Query 169715 GGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTT 169774 ||||||||||||||||| | |||| || || ||||| |||||||| || | |||||| Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 169775 TTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCG 169834 ||| || ||||||| |||| ||||| || ||||| | ||||||||| || || || Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 169835 GGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTC 169894 || || || |||| |||| | || ||||| |||||||||||||||| |||||||| || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 169895 CACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGC 169954 |||||| | || || | || || || || || || || || || || ||||| ||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014 Query 169955 CTCGTCACTTCGAGTCTTGTCCGTGAAACCAC 169986 | || || |||||| ||| | |||||||| Sbjct 7013 TTGGTAACCTCGAGT-TTGATCAGGAAACCAC 6983 >seq59 Length=339703 Score = 147 bits (162), Expect = 3e-30 Identities = 189/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 169803 CGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCC 169862 |||| ||||| | ||||||||| || | || || || || |||| |||| | || |||| Sbjct 52307 CGTTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCC 52366 Query 169863 AAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTG 169922 | ||||||||||||||||| |||||||| || |||||| | | || || || || || | Sbjct 52367 ATGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCG 52426 Query 169923 GTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAA 169982 | || || || || || | ||||| ||| | || || |||||| | | | |||| Sbjct 52427 GCGGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAA 52486 Query 169983 CCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACA 170042 |||| || || || || || | ||||||| ||| |||||||| |||||||| || | Sbjct 52487 CCACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATA 52546 Query 170043 ACATCGTTGCCGCTCACGGTT 170063 | || || || |||| |||| Sbjct 52547 ATATTGTAGCTACTCATGGTT 52567 >seq8630 Length=23577 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/133 (76%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 170009 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTT-GCCGCTCACGGTTACTT 170067 |||||||| || |||||||| || || || || || ||||| || ||||| ||||| || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 170068 CGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCT 170127 ||||| | ||||||||||| ||| |||||||| || ||||| | || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 170128 CGCAGCATGGCCT 170140 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589329243166880