Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_031944.1
Length=185102
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 351 1e-91
seq29420 208 9e-49
seq8546 201 1e-46
seq25216 176 5e-39
seq59 147 3e-30
seq8630 93.3 5e-14
>seq5412
Length=31808
Score = 351 bits (388), Expect = 1e-91
Identities = 492/691 (71%), Gaps = 6/691 (1%)
Strand=Plus/Minus
Query 169398 GGTTCGGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCT 169457
|||| ||||| ||||||| || | | || | ||||| | || || || ||||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTTATTATAGCCT 15224
Query 169458 TCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGA 169517
|||| | |||||| || || || || || || || || ||||| ||| ||| |||||
Sbjct 15223 TCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTC 15164
Query 169518 TGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTC 169577
| || || ||||| || ||||||||||| || | | ||| || || ||| | |
Sbjct 15163 TTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGC 15104
Query 169578 ACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTT 169637
|||| ||||| || |||||||| ||| | | ||||||||||| ||||| |||||||| |
Sbjct 15103 ACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCAT 15044
Query 169638 TCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGG 169697
| || |||| || |||||| | | || | | ||||||||||||||||||||
Sbjct 15043 ATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGG 14984
Query 169698 AATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTG 169757
|| | | ||||||||||||||||||||||| |||||| || || || || ||||
Sbjct 14983 AACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTG 14924
Query 169758 CGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTA 169817
|| | || | ||||||||| || ||||||| |||| |||| || ||| | | ||
Sbjct 14923 CGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGTA 14864
Query 169818 TGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACA 169877
||||||| || || || || || || |||| |||| | || ||||| |||||||||||||
Sbjct 14863 TGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACA 14804
Query 169878 TCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTA 169937
|||| |||||||| || |||||| | || || || || || || | || | || || |
Sbjct 14803 TCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTCA 14744
Query 169938 GCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGT 169997
| ||| ||| | || || |||||| | || | |||||||| || || || |
Sbjct 14743 G------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAAT 14690
Query 169998 CCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTC 170057
| || | ||||||| | | |||||||| |||||||| || || ||||| || ||||
Sbjct 14689 CTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCTC 14630
Query 170058 ACGGTTACTTCGGTCGCCTGATCTTCCAATA 170088
| ||||| || || || | |||||||||||
Sbjct 14629 ATGGTTATTTTGGCCGATTAATCTTCCAATA 14599
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 170202 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACG 170261
|||| |||||||| || | | ||| |||| |||||||| | || || ||||| ||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 170262 TTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 170321
|| | ||||| || ||||| |||||||| ||||| || |||||||||| |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 170322 CTCTCGACCTCGCTGC 170337
|||||||||| || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq29420
Length=7120
Score = 208 bits (230), Expect = 9e-49
Identities = 262/360 (73%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 169465 TGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGG 169524
|||||| || || || || || || || || ||||| ||| |||| ||||| | | ||
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474
Query 169525 TAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTA 169584
||||| || |||||||||| || | || |||| || || ||| | ||||| ||
Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534
Query 169585 TCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACT 169644
||| || |||||||| ||| | | ||||||||||| ||||| |||||||||| | ||
Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594
Query 169645 GGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTC 169704
||| || |||||| | | || | | |||||||||||||||||||||| |
Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654
Query 169705 CTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGC 169764
| ||||||||||||||||||||||| |||||| || || | ||| |||||||| ||
Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714
Query 169765 CTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCT 169824
| || ||||| || ||||||| |||| ||||| || ||||| | |||||||||
Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq8546
Length=31398
Score = 201 bits (222), Expect = 1e-46
Identities = 311/444 (70%), Gaps = 4/444 (1%)
Strand=Plus/Minus
Query 169895 CACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGC 169954
|||||| | || || || || || || || || || | || || | ||||| |||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 169955 CTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTAC 170014
| || || || ||| | || | |||||||| || || | ||| || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 170015 AAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGC 170074
| || |||||||| || || || | || || || || ||||| ||||| || || ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 170075 CTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCA 170134
| ||||||||||| ||| |||||| | || | ||| | || |||||| | | ||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 170135 TGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTG 170194
|||||||| || || || ||||| || || | ||| | || ||||| || | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 170195 AACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGG 170254
||||| ||||| |||||||| || | | ||| |||| |||||||| || |||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849
Query 170255 GCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCAC 170314
|| || || | ||||| ||| ||||| |||||||| ||||| || |||||||||||
Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789
Query 170315 AACTTCCCTCTCGACCTCGCTGCT 170338
||||||| ||| ||||| ||||||
Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765
>seq25216
Length=8180
Score = 176 bits (194), Expect = 5e-39
Identities = 203/272 (75%), Gaps = 1/272 (0%)
Strand=Plus/Minus
Query 169715 GGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTT 169774
||||||||||||||||| | |||| || || ||||| |||||||| || | ||||||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 169775 TTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCG 169834
||| || ||||||| |||| ||||| || ||||| | ||||||||| || || ||
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 169835 GGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTC 169894
|| || || |||| |||| | || ||||| |||||||||||||||| |||||||| ||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 169895 CACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGC 169954
|||||| | || || | || || || || || || || || || || ||||| |||
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014
Query 169955 CTCGTCACTTCGAGTCTTGTCCGTGAAACCAC 169986
| || || |||||| ||| | ||||||||
Sbjct 7013 TTGGTAACCTCGAGT-TTGATCAGGAAACCAC 6983
>seq59
Length=339703
Score = 147 bits (162), Expect = 3e-30
Identities = 189/261 (72%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 169803 CGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCC 169862
|||| ||||| | ||||||||| || | || || || || |||| |||| | || ||||
Sbjct 52307 CGTTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCC 52366
Query 169863 AAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTG 169922
| ||||||||||||||||| |||||||| || |||||| | | || || || || || |
Sbjct 52367 ATGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCG 52426
Query 169923 GTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAA 169982
| || || || || || | ||||| ||| | || || |||||| | | | ||||
Sbjct 52427 GCGGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAA 52486
Query 169983 CCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACA 170042
|||| || || || || || | ||||||| ||| |||||||| |||||||| || |
Sbjct 52487 CCACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATA 52546
Query 170043 ACATCGTTGCCGCTCACGGTT 170063
| || || || |||| ||||
Sbjct 52547 ATATTGTAGCTACTCATGGTT 52567
>seq8630
Length=23577
Score = 93.3 bits (102), Expect = 5e-14
Identities = 101/133 (76%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 170009 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTT-GCCGCTCACGGTTACTT 170067
|||||||| || |||||||| || || || || || ||||| || ||||| ||||| ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 170068 CGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCT 170127
||||| | ||||||||||| ||| |||||||| || ||||| | || ||||| |
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616
Query 170128 CGCAGCATGGCCT 170140
|| || ||||||
Sbjct 7617 AGCCGCTTGGCCT 7629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589329243166880
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