Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq48644 134 1e-26 seq45117 134 1e-26 seq184 134 1e-26 seq10588 111 1e-19 seq1077 107 2e-18 seq1982 100 3e-16 seq87 100 3e-16 seq9434 95.1 1e-14 seq4209 87.8 2e-12 >seq48644 Length=2856 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || ||||| | |||||| || || || |||||| |||||||| ||||||| Sbjct 1832 CGCCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGG 1891 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||||| || |||| || ||||| ||||||||||| || || ||||| ||||||| | Sbjct 1892 CGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 1951 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || ||||||||| || | || |||| || | | | |||||| || || Sbjct 1952 GGATGCCTTCCTTGTCC-TGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCA 2010 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | |||||||| || || || || || || || || |||||||| || Sbjct 2011 ACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063 >seq45117 Length=3449 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || ||||| | |||||| || || || |||||| |||||||| ||||||| Sbjct 2425 CGCCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGG 2484 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||||| || |||| || ||||| ||||||||||| || || ||||| ||||||| | Sbjct 2485 CGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTG 2544 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || ||||||||| || | || |||| || | | | |||||| || || Sbjct 2545 GGATGCCTTCCTTGTCC-TGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCA 2603 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | |||||||| || || || || || || || || |||||||| || Sbjct 2604 ACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656 >seq184 Length=120086 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| || ||||| |||||||| || || || |||| | Sbjct 5453 CCACCACGAAGACGAAGCACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCG 5394 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| |||||||| || || || || ||||| | ||| Sbjct 5393 AGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGA 5334 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| ||| ||||| | | | | |||||| || || || Sbjct 5333 ATTCCTTCCTTGTCCTGGATCTTTGCCTTCA-CATTGTCGATGGTGTCGGAGGATTCGAC 5275 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | |||||||| ||||||||||| || || |||||||||||||| || Sbjct 5274 CTCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACGAAAATCTGCATCTT 5224 >seq10588 Length=20159 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || ||| ||||||||| || || || || | Sbjct 1253 CCACCACGCAGACGAAGCACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCT 1312 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || ||||||||||| || || || || || | ||| ||||||| |||| Sbjct 1313 AGGGTTCTTCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGA 1372 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || |||| ||| | | | |||||| ||| || Sbjct 1373 ATACCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATGGTGTCGGAGCTCTCAAC 1431 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || |||||||| || || |||||||| Sbjct 1432 CTCCAAGGTGATAGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || |||||||||||| || || || | Sbjct 1025 CCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCA 1084 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| || || || |||| ||||||||||| | ||| Sbjct 1085 AGAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 1144 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTC---GCTCGACTC 41811 | | ||||||||| ||| || ||||| | | | | ||| || ||| ||| Sbjct 1145 ATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATTATCA-ATAGTATCAGAGCT---CTC 1200 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || |||| ||||| || || |||||||| Sbjct 1201 AACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTAACAAAGATCTGCAT 1251 >seq1077 Length=76872 Score = 107 bits (118), Expect = 2e-18 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||||||| | ||| ||||||||||| ||| ||||||| | Sbjct 52849 CCACCACGAAGACGGATCACCAGATGAATCGTCGACTCCTTCTGAACGTTGTAGTCGGCG 52790 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || ||| || ||||| || || ||| |||| | | ||| |||||| || Sbjct 52789 AGCGTACG---GTCTTCAAGCTGTTTTCCAGCGTATATTATCCTCTGCTGGTCCAGTGGG 52733 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC--CA 41813 |||| ||||||||| || || ||||| | | |||||| ||||| | Sbjct 52732 ACGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTAAATGGTGTCGGAAGACTCGACT 52673 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT-GTTA 41866 |||| | ||||||| | || ||||| || ||| | ||||| |||||||| |||| Sbjct 52672 CCTCTAGCGTTATCATCTTCCCCGTTAGTGTCCTCACGAATATCTGCATCGTTA 52619 >seq1982 Length=56187 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| |||||||| ||||| ||||||| Sbjct 32417 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCA 32358 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| |||||||| || || ||||| ||||||| || Sbjct 32357 AGAGTACGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGG 32298 Query 41756 ACGCTCTCCTTGTCC 41770 | | |||||||||| Sbjct 32297 ATTCCCTCCTTGTCC 32283 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 41706 CGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCT 41765 |||| ||||||||||| |||||||| || || ||||| ||||||| || | | ||||| Sbjct 32275 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 32216 Query 41766 TGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || |||| || | | | |||||| ||||| ||||| | ||| Sbjct 32215 TGTCCTGGATCTTGGCCTTC-ACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTT 32157 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || ||||| || || || ||||| |||||||| || Sbjct 32156 ATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATCTT 32116 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 41706 CGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCT 41765 |||| ||||||||||| |||||||| || || ||||| ||||||| || | | ||||| Sbjct 21938 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 21879 Query 41766 TGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| | || || | || | | | |||||| ||||| ||||| | ||| Sbjct 21878 TGTCC-TGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTT 21820 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || ||||| | || || ||||| |||||||| || Sbjct 21819 ATCGTCTTCCCCGTTAAGGTTTTCACGAAGATCTGCATCTT 21779 >seq87 Length=177581 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || ||| ||| ||||| |||||||| || | Sbjct 54895 CCACCACGAAGACGAAGAACCAAATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCA 54954 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || ||||| ||||||||||| || |||| | ||| ||||| | || Sbjct 54955 AGGGTCCTTCCATCTTCGAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGG 55014 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||| | | ||| | || |||| ||| | | | ||||| ||| ||| Sbjct 55015 ATTCCCTCCTTAT-CTTGAATCTTAGCTTTGACGTTGTCAATTGTGTCAGAGCT---CTC 55070 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||| || || || ||||| || || || |||||||||||||| Sbjct 55071 AACTTCCAACGTAATGGTCTTTCCCGTAAGGGTTTTGACGAAAATCTGCAT 55121 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || ||||| ||| ||||||||||||||||||||| | | Sbjct 54439 CCACCACGGAGACGAAGGACGAGGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCTGCG 54498 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| | || ||||| ||||| || || || || || | || ||||| | || Sbjct 54499 AGAGTACGCCCATCTTCGAGTTGCTTACCCGCAAAGATGAGTCTTTGCTGGTCTGGCGGG 54558 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||| | | || ||||||| | || | | | ||||| ||| ||| Sbjct 54559 ATACCCTCCTTAT-CTTGGATTTTTGCCTTGACATTGTCAATGGTGTCTGAGCT---CTC 54614 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | ||||| || ||||| || || || || || || || ||||| Sbjct 54615 AACTTCAAGAGTTATTGTCTTACCAGTGAGGGTTTTCACAAAGATTTGCAT 54665 >seq9434 Length=50679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| |||||||||||||||||| || | Sbjct 44711 CCACCTCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCT 44770 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || || ||||| || || || ||||| ||||| ||||| | ||| Sbjct 44771 AGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 44830 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||||||| ||| |||| || | ||| | | | || || ||| || Sbjct 44831 ATCCCTTCCTTGTCC-TGAATTTTAGCCTTAACATTGTCGATTGTATCAGAGCT---TTC 44886 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || ||||| || |||| ||||| || || || ||||| Sbjct 44887 AACCTCCAAGGTGATGGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||| |||||||||||||| | Sbjct 45167 CCTCCACGGAGACGAAGCACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAGTCTGCT 45226 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || |||||||| || || || |||| | ||||||||| | ||| Sbjct 45227 AATGTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGA 45286 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||| ||| ||| | || || | || | | | ||||| ||| ||| Sbjct 45287 ATTCCCTCCTTATCC-TGAATCTTCGCCTTTACATTGTCAATGGTGTCCGAGCT---CTC 45342 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| |||| || || || || || ||||| ||||| || ||||||||||| Sbjct 45343 CACTTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 45393 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| |||||||| |||||||| || | Sbjct 45623 CCACCACGAAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCA 45682 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || || || ||||||||||| || |||| | ||| || || | |||| Sbjct 45683 AGGGTCCTTCCATCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 45742 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | |||||||| | ||| | || |||| || | || | ||| || || ||| Sbjct 45743 ATTCCCTCCTTGT-CTTGAATCTTAGCTTTGACATTGTCA-ATTGTGTCT-GAGCTCTCG 45799 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || || || ||||||||||| |||||||| Sbjct 45800 ACTTCAAGTGTGATAGTCTTGCCAGTTAGGGTCTTTACGAATATCTGCAT 45849 >seq4209 Length=73032 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || || ||||||||| ||||||||||| | Sbjct 6 GCCACCACGAAGACGGAGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGC 65 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 ||||| | | || |||||||||||||| || || || || ||||| ||||| | || Sbjct 66 AAGGGTTCTACCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGG 125 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGAC 41809 || | || ||||||| | || | || || | || | | | ||||| ||| | Sbjct 126 GATCCCT-TCCTTGT-CTTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCT---C 180 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| | ||||| || || || |||| || || || || |||||||| Sbjct 181 TCAACCTCTAGGGTTATGGTCTTTCCGGTCAATGTTTTCACAAAGATCTGCAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460064171792800