Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq143 163 6e-35 seq15 105 1e-17 seq4909 104 5e-17 seq337 104 5e-17 seq303 104 5e-17 seq101 104 5e-17 seq1 104 5e-17 seq50 102 2e-16 seq642 98.7 2e-15 seq391 98.7 2e-15 seq55 98.7 2e-15 >seq143 Length=298601 Score = 163 bits (180), Expect = 6e-35 Identities = 313/456 (69%), Gaps = 4/456 (1%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || |||||||| ||| |||||| | || || ||||| || | || ||||| || Sbjct 58047 TCCTTCGCCGAGCGCCTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 58106 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||||||||||| ||||| ||| || ||||||| || ||| | || ||| Sbjct 58107 TTCTGCGCCATCTTCTGGCTAAAGAAGCGCGGGTTGATGCCGGGACTCACCTTCTCCAAC 58166 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGC-TTATGTATTCAAA 230348 ||||| ||| || |||||||| | || | |||| || || || |||| ||| Sbjct 58167 GAGTTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCG-CGTGCCTTCTGTACTCACT 58225 Query 230349 GCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 || ||| ||||| ||| |||||| ||| | || || || || | Sbjct 58226 ACTGAGGAAGAAGCTGAGCGAGGAGCGGGTCAAGGGGATCGTCCGCGACGCGGTGGAGAT 58285 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAAC 230467 ||| | |||||| | || ||||| | || || ||| || ||| |||||| |||| Sbjct 58286 CGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTG-CGCGTTGGTGGGGATGAACCGGGAAC 58344 Query 230468 TTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGA 230527 | ||| | |||||||||||||| || ||||| || || | | ||| || || | || || Sbjct 58345 TGATGAGCCAGTACATCGAATTTGTCGCCGATCGGCTTCTGGGTGCGCTAGGGTGCGGGA 58404 Query 230528 AAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 | |||||| ||||||| |||| | |||||||| || ||| | || ||||||| Sbjct 58405 AGGTGTACGGAGTGCAGAACCCGTTTGATTGGATGGAGCTGATATCGTTGCAGGGGAAGA 58464 Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||||||||||||| ||| | ||| |||| || |||| Sbjct 58465 CCAACTTCTTCGAGAAGAGGGTCGGTGAGTACCAGA 58500 >seq15 Length=857006 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 193522 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 193581 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 193582 CCCCACGGTGGGC 193594 >seq4909 Length=1373 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 519 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 578 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 579 CCCACGGTGGGC 590 >seq337 Length=180865 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 50991 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 51050 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 51051 CCCACGGTGGGC 51062 >seq303 Length=193259 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 12378 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12319 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12318 CCCACGGTGGGC 12307 >seq101 Length=350468 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1016 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 957 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 956 CCCACGGTGGGC 945 >seq1 Length=1764766 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1505037 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1504978 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1504977 CCCACGGTGGGC 1504966 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||| | Sbjct 1023282 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 1023223 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1023222 CCCACGGTGGGC 1023211 >seq50 Length=509894 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 275602 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 275543 Query 165768 GCCCCACGATGGGC 165781 ||||||| ||||| Sbjct 275542 ACCCCACGGTGGGC 275529 >seq642 Length=104802 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 80779 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 80838 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 80839 CCCACGGTGGGC 80850 >seq391 Length=161468 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 34083 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34142 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 34143 CCCACGGTGGGC 34154 >seq55 Length=488294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 354072 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 354013 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 354012 CCCACGGTGGGC 354001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057444573406850