Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq143 125 7e-24 >seq143 Length=298601 Score = 125 bits (138), Expect = 7e-24 Identities = 378/579 (65%), Gaps = 5/579 (1%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||||||||| || || |||||||||| ||| | ||||| || || || Sbjct 58213 AGGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTG 58154 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| || || ||||||| ||| || || ||| ||| || || ||| Sbjct 58153 AGTCCCGGCATCAACCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAG 58094 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || |||||| | || || ||||| | || |||||| | | | || || Sbjct 58093 AAGATCCCTTCGACGCAGGCGAAGGCGATGAGGCGCTCGGCGAAGGACTCGGAGCCGT-- 58036 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||| |||| | |||||| ||| || | | | |||| | || || ||||| Sbjct 58035 CGA-TCCAGCGGAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGACAGTGTCGATGGCG 57977 Query 17201 TTAAATAATTT-CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 || | ||||| | | | || | || || || |||| ||| |||||||| Sbjct 57976 CGGAAGAGGCGGCTCTTCTCGGCGGAA-TCCTTGATGTAGGTCTCGAGGAGGAGGCTGTA 57918 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||||||||||| |||||||| ||||| ||||| || ||||| ||| || || ||||| Sbjct 57917 CATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGC 57858 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | || || ||| ||| | | || ||||| || |||||||||||| || Sbjct 57857 GACCTGGACCTCCTTCATGAACCCACCGGCGAGATTCTCTAGGACGATGCCGTCGGAGGC 57798 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCA 17439 |||||| || || | | || | ||||| | || ||||| || || || | | Sbjct 57797 GGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTGAGGGCTTCGAA 57738 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 | | || | ||| | || || || |||| ||||||||| ||| | ||||| Sbjct 57737 CTGGCGGATGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAAAACGAGGCCTCGGCCTT 57678 Query 17500 TTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||||| | ||| || || ||| || || ||||| Sbjct 57677 CTTGTACATCTCCCAGATCTCCGGGTACTGGATCGGGAA 57639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517364491386600