Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq19 138 1e-27 seq168 122 7e-23 seq207 114 1e-20 seq6 105 6e-18 seq1067 87.8 2e-12 >seq19 Length=713669 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| ||| | |||| |||||| || ||||| ||||||| Sbjct 623060 TTCCACCACGGAGACGGAGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCG 623119 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | ||||| | ||||||| |||||||| || || | ||||| |||||||||||| || Sbjct 623120 CGAGGGTGCGACCGTCCTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGG 623179 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| |||||| | | ||| || || | ||| Sbjct 623180 GAATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCGA 623239 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| | ||||| ||||| || ||||| Sbjct 623240 CCTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 623288 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | |||| |||||| || ||||| ||||| || Sbjct 623290 CCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 623349 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || ||||||||||||| || || || | || || | |||||||||| || Sbjct 623350 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623409 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | ||| || || | |||| Sbjct 623410 ATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACC 623469 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||| ||||||| ||||| |||||||| ||||| Sbjct 623470 TCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| |||| ||||| || |||||||| || ||||| || || || Sbjct 623518 CCACCGCGGAGCCTGAGTACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 623577 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||| ||| ||||| || | || || |||||||||||| || Sbjct 623578 AGGGTGCGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 623637 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | ||| || ||| | ||| | Sbjct 623638 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAGCTCTCGACT 623697 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||| ||||||| |||||||| || || ||||| Sbjct 623698 TCTAGGGTTATCGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 623744 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | |||||||||||| || ||||| || || || Sbjct 628707 CCGCCGCGAAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 628766 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| || ||||| || || || | || || | |||||||||| || Sbjct 628767 AGGGTCCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 628826 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| || || | ||| Sbjct 628827 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACC 628886 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || |||||||||||||||| |||||||| || || ||||| || Sbjct 628887 TCGAGAGTTATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATATT 628936 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||| |||||||| || ||||| || || || ||||| || ||||| Sbjct 623761 AGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCC 623820 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | || || | |||||||||| || | || |||||||| Sbjct 623821 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCT 623880 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | ||| || || | ||| || | || |||||| Sbjct 623881 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTC 623940 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||||||| | |||||||| || || ||||| || Sbjct 623941 TTGCCGGTGAGGGTTTTGACGAAGATCTGCATATT 623975 >seq168 Length=274740 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||||||||| || ||||| ||||| || Sbjct 146842 CCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 146901 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || ||||||| ||||||||||| || | || || |||||||||||| || Sbjct 146902 AGGGTTCGGCCGTCCTCAAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGG 146961 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||| || | ||| || ||| | ||| Sbjct 146962 ATACCCTCCTTGTCTTGAATCTTAGCTTTGACATTATCGATGGTGTCAGAGCTTTCCACC 147021 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | ||||| || || || ||||| Sbjct 147022 TCGAGGGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAGATCTGCAT 147068 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| ||| | ||||||||||| || ||||| ||||| | Sbjct 146612 TTCCTCCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 146671 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | |||||| | ||||||| ||||| ||||| ||| | || |||||||||||||| || Sbjct 146672 CGAGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGG 146731 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| ||| || || || | | | | || || | ||| Sbjct 146732 GGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAA 146791 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||| || ||||| | || || || || |||||||| Sbjct 146792 CCTCGAGGGTGATGGTTTTCCCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||| || || |||||||| ||||| || Sbjct 146386 CCACCACGGAGACGGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCG 146445 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | ||||| ||||| || || || | || | |||||||||||| ||| Sbjct 146446 AGGGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGG 146505 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||| || | | | | || || | || Sbjct 146506 ATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACC 146565 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||| || ||||| | || |||||||||||||||||| Sbjct 146566 TCCAAGGTGATGGTTTTCCCGGTGAGGGTCTTGACAAATATTTGCATT 146613 Score = 105 bits (116), Expect = 6e-18 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || || || |||||||||||||| ||||||| ||||| ||||| Sbjct 145732 GTAGACTCCTTCTGGATATTGTAGTCCGCCAGGGTCCTCCCGTCCTCGAGCTGCTTGCCA 145791 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| || |||||||||||| || | ||| |||||||| |||||| ||| Sbjct 145792 GCGAAAATCAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTC 145851 Query 21099 ACCTGGCCGACAGTATCACCGGGCTC-CG-TTTCCACGGTAATGGTCTTGCCGGTTAACG 21156 || | | ||| || | ||| |||| || |||| ||| |||||||| ||||| | | Sbjct 145852 ACATTGTCGATGGTGT--CCGAGCTCTCGACCTCCAAGGTGATGGTCTTCCCGGTGAGGG 145909 Query 21157 TTTTGACAAATATTTGCAT 21175 | || || || || ||||| Sbjct 145910 TCTTAACGAAAATCTGCAT 145928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | || |||||||| |||||||| ||||| || Sbjct 145930 CCACCACGCAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGCA 145989 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| ||||| ||||| || | || | ||||||||||| ||| Sbjct 145990 AGGGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 146049 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC-CG- 21126 | || |||||||| || || ||||| | | | | || | ||| |||| || Sbjct 146050 ATACCCTCCTTGTCCTGAATTTTGGCCTTCACGTTGTCAATGGTGT--CCGAGCTCTCGA 146107 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || |||||||| ||||| || || || || || || |||||| Sbjct 146108 CTTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAAATCTGCATT 146157 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | | ||||| || | ||| |||||||| || ||||| ||||| | Sbjct 146156 TTCCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAG 146215 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||||| | | ||||| || |||||||||||| | || | ||||||||||| | Sbjct 146216 CCAGGGTACGTCCATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTG 146275 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| ||||| || || | | | | || || | || Sbjct 146276 GGATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAA 146335 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| ||||| | || || ||||| || ||||| Sbjct 146336 CCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 >seq207 Length=245090 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | |||||||||||| || ||||| ||||| || |||||| || |||| Sbjct 172625 GAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTC 172566 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||||||| || || ||| | || || | |||||||||| || | || ||||| || Sbjct 172565 CTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATC 172506 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | | ||| || || || ||| || | ||| ||||| Sbjct 172505 CTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGT 172446 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||| || |||| ||||| || || || ||||| || Sbjct 172445 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 172410 >seq6 Length=1122688 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| |||| || | ||| |||| || | ||||||||||| || ||||| ||||| || Sbjct 399113 TCCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 399172 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||||| || ||||||| ||||| || || || | || || | ||||||||| || Sbjct 399173 GAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 399232 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || |||||||| |||||| || || | | ||| ||| || || ||| Sbjct 399233 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGAC 399292 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || |||| ||||| || || || ||||| Sbjct 399293 CTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 399340 >seq1067 Length=57296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||||||||| ||||| |||||||| | ||||| ||||| || || Sbjct 37427 GTGGACTCCTTTTGAATGTTGTAGTCGGCCAGGGTCCTTCCATCCTCAAGCTGCTTCCCA 37486 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 || | ||||| ||||||||||| || | ||| |||||||| |||||| Sbjct 37487 GCGAAGATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTT 37539 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| |||||||| || || |||| || | ||||||| ||| || || Sbjct 36971 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAACTGCTTCCCT 37030 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| | ||||||||||| || | ||| |||||||| || || ||| Sbjct 37031 GCAAAAATCAACCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATTTTCGCCTTC 37090 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||||||| || | |||| |||| ||| || ||||| || || || || Sbjct 37091 ACATTGTCGACAGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCAGTCAAGGTC 37150 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 37151 TTCACGAAGATCTGCAT 37167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422115129779420