Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq168 132 6e-26 seq19 111 2e-19 seq420 109 6e-19 seq6 109 6e-19 seq1067 100 3e-16 seq207 86.0 7e-12 >seq168 Length=274740 Score = 132 bits (146), Expect = 6e-26 Identities = 171/232 (74%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | ||||||||| | ||| |||||| || || ||||| || || Sbjct 146613 TCCTCCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 146672 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||| |||| || |||||||| || || || ||||||| ||||||||| | || Sbjct 146673 GAGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGG 146732 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCG---CTCGATT 43131 | || |||||||||| |||||| |||| ||| | || | ||||| ||| | Sbjct 146733 GATGCCCTCCTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---T 146788 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||| ||||||||||| || || || ||||| || ||||||||||| Sbjct 146789 CAACCTCGAGGGTGATGGTTTTCCCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| || || ||||| ||||| || || || || || | Sbjct 146397 ACGGAGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCC 146456 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||||||||| ||||| || | || ||||||||| | || | || |||||| Sbjct 146457 ATCCTCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTT 146516 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || ||||| | | | |||||| ||| || || | ||||| Sbjct 146517 GTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGAT 146576 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||| || || || ||||| ||||| ||||||||| Sbjct 146577 GGTTTTCCCGGTGAGGGTCTTGACAAATATTTGCATT 146613 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || |||||| || || ||||| |||||||| || || | Sbjct 146169 ACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCC 146228 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || || || || || || || | | ||||||||| | || | || |||||| Sbjct 146229 ATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTT 146288 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | || | |||| | | | |||||| ||| || || | |||| Sbjct 146289 GT-CTTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCCAAGGTGA 146347 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || || ||||| ||||| || ||||| Sbjct 146348 TGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 >seq19 Length=713669 Score = 111 bits (122), Expect = 2e-19 Identities = 147/200 (74%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| || || ||||| |||| || |||||||| |||||||| Sbjct 628742 CTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCTTCGAGCTGCTTTCCAGCGAA 628801 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | ||| | | ||||||||| ||| || |||| ||| Sbjct 628802 GATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 628860 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || |||| || ||||| ||||| ||||| || | Sbjct 628861 TGTCGATGGTGTCGGAGCTC---TCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGGTTT 628917 Query 43168 TTACAAAGATTTGCATTTTT 43187 | || ||||| ||||| ||| Sbjct 628918 TGACGAAGATCTGCATATTT 628937 Score = 102 bits (112), Expect = 9e-17 Identities = 143/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||||||||| || || || | || || | |||||| || || || Sbjct 622869 CTCCTTCTGGATATTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCGGCAAA 622928 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| ||| || || | ||| Sbjct 622929 GATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 622987 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || |||| ||||| || |||||||| || |||| Sbjct 622988 TGTCGATTGTGTCCGAGCTC---TCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCT 623044 Query 43168 TTACAAAGATTTGCATT 43184 | |||||||| |||||| Sbjct 623045 TGACAAAGATCTGCATT 623061 Score = 102 bits (112), Expect = 9e-17 Identities = 145/200 (73%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| || || ||||| |||| || |||||||| || ||||| Sbjct 623781 CTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 623840 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 623841 GATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGT 623899 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || |||| |||||||| ||||| || || || | Sbjct 623900 TGTCGATGGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTT 623956 Query 43168 TTACAAAGATTTGCATTTTT 43187 | || ||||| ||||| ||| Sbjct 623957 TGACGAAGATCTGCATATTT 623976 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | ||||| ||| | ||||||||||| || || ||||| || || Sbjct 623290 CCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 623349 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| || ||||| || || ||||||||||| | || Sbjct 623350 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623409 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||| ||| ||| || |||| ||| | | | ||||| |||| || Sbjct 623410 ATCCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTC---TC 623465 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | ||||| || || || ||||| || || ||||| || ||||| Sbjct 623466 CACCTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| ||| | ||||||||||| || || ||||| || || || || || | Sbjct 623073 ACGGAGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACC 623132 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || ||||| || || ||||| || || | ||||||||| | || | | ||||| Sbjct 623133 GTCCTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTT 623192 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 |||| ||| || ||| | ||| | | | ||||| |||| || || || | | Sbjct 623193 GTCCTGGATCTTGGCTTTCA-CGTTGTCGATGGTGTCGGAGCTC---TCGACCTCAAGGG 623248 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || ||||| || || || || ||||| || ||||| Sbjct 623249 TGATCGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 623288 >seq420 Length=153407 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | || | ||||| || | || |||||| || || ||||| || || Sbjct 119094 TCCTCCCCTAAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 119153 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||||| |||| || |||||||| || ||||| ||||| ||||||||||| | ||| Sbjct 119154 GAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 119213 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| || || | | | | |||||| || || || Sbjct 119214 GATTCCCTCCTTGTCCTGGATCTTGGTCTTCACATTGTCGATGGTGTCGGAGGACTCAAC 119273 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || ||||| || |||||||| || || || ||||| ||||| Sbjct 119274 CTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 119321 >seq6 Length=1122688 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | || | ||||| || | ||| |||||| || || ||||| || || Sbjct 399113 TCCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 399172 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||||| |||| || |||||||| || ||||| || || ||||||||||||| || Sbjct 399173 GAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 399232 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| || |||| | | | |||||| || || || Sbjct 399233 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGAC 399292 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||| || |||||||| || || || ||||| ||||| Sbjct 399293 CTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 399340 >seq1067 Length=57296 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || || ||||| || ||||||| | || || ||||| || |||||||| Sbjct 37205 TCCTTCTGGATGTTATAATCCGCAAGAGTCCTACCATCTTCGAGCTGTTTCCCAGCGAAA 37264 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || ||||||||||| | || | | |||||||| | ||| | |||| |||| | Sbjct 37265 ATCAGCCGCTGCTGGTCAGGGGGGATTCCCTCCTTGT-CTTGAATCTTTGCCTTGACGTT 37323 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | |||||| |||| ||||| || | |||||||| || || || |||||||| Sbjct 37324 ATCAATCGTGTCTGAGCTC---TCCACCTCAAGGGTGATGGTCTTTCCTGTAAGCGTCTT 37380 Query 43169 TACAAAGATTTGCATT 43184 ||||| || |||||| Sbjct 37381 GACAAAAATCTGCATT 37396 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||||| ||||| | || || | |||||| || || || Sbjct 36976 CTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAACTGCTTCCCTGCAAA 37035 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | | ||||||||| | ||| | || |||||||||| ||| |||| | || | Sbjct 37036 AATCAACCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC-TGAATTTTCGCCTTCACAT 37094 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | || ||||| |||| ||||| || | ||||| || || || || | |||| Sbjct 37095 TGTCGACAGTGTCCGAGCTC---TCCACCTCCAAGGTGATCGTCTTCCCAGTCAAGGTCT 37151 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||| ||||| Sbjct 37152 TCACGAAGATCTGCAT 37167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| ||||| || ||||| |||| | || || |||||||| |||||||| Sbjct 37432 CTCCTTTTGAATGTTGTAGTCGGCCAGGGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAA 37491 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || || | ||||||||| | || | || |||||||||| ||| || Sbjct 37492 GATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTT 37539 >seq207 Length=245090 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | || | |||| || | ||| |||||| || || ||||| || || Sbjct 172640 TCCTCCCCTGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 172581 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || |||||||| || || || || || ||||||||||| | ||| Sbjct 172580 GAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCGG 172521 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||| ||| ||| || || | | | | ||||| || || || Sbjct 172520 AATCCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCGAC 172461 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | || ||||| || |||||||| || || || ||||| ||||| ||| Sbjct 172460 CTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 172409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571617499578600