Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq420 116 2e-21 seq6 113 3e-20 seq19 109 4e-19 seq168 107 1e-18 seq207 100 2e-16 >seq420 Length=153407 Score = 116 bits (128), Expect = 2e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||||| || ||| |||| Sbjct 119110 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCC 119169 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTC 34296 || | ||||||||| ||||| ||||| |||||||||| || |||| | | ||||||||| Sbjct 119170 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG-ATTCCCTCCTTGTC 119228 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | | || | |||| || || || || | || ||||| Sbjct 119229 CTGGATCTTGGTCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGT 119288 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || |||||||| ||||||||||| Sbjct 119289 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 119321 >seq6 Length=1122688 Score = 113 bits (124), Expect = 3e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || ||| |||| || | |||||| || ||||| Sbjct 399150 TCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 399209 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||||||| || | | ||||||||| ||||| ||| | || | Sbjct 399210 ATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTG 399269 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || ||||| |||| || ||||| || || || || |||||||| Sbjct 399270 TCGATAGTGTCGGAGGACTCGACCTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACG 399329 Query 34379 AAGATCTGCATCGCT 34393 ||||||||||| ||| Sbjct 399330 AAGATCTGCATGGCT 399344 >seq19 Length=713669 Score = 109 bits (120), Expect = 4e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | |||||||| || | ||| || || ||||| ||||||||||| | Sbjct 623061 TCCACCACGGAGACGGAGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGC 623120 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | ||| || || ||||| || |||| ||||||||| ||| Sbjct 623121 GAGGGTGCGACCGTCCTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGG 623180 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| ||| || ||||| | | | | || | |||| |||| Sbjct 623181 AATACCTTCCTTGTCCTGGATC-TTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCGA 623239 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 | || | ||||| || ||||||||||| ||||||||||| ||||||||| ||| Sbjct 623240 CCTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCATCCCTC 623293 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || ||||| || | |||| || ||||| |||||||| |||| || ||| |||| Sbjct 623761 AGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCC 623820 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || || ||||||||||| || | | ||||||||| Sbjct 623821 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCT 623880 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| ||||| || | |||||||| Sbjct 623881 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTC 623940 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| ||||| || ||||||||||| Sbjct 623941 TTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 623972 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||||| || | ||| || || ||||| ||||||||||||| || ||| |||| Sbjct 623305 AGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCC 623364 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| || || ||||||||||| || | | ||||| || Sbjct 623365 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTATCC 623424 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || |||| ||||| || Sbjct 623425 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTC 623484 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || ||||||||||| |||||||| Sbjct 623485 TTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 104 bits (114), Expect = 2e-17 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 34155 CGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGT 34214 ||||| |||||||| || | || |||||||| | ||| || ||||| ||||||| Sbjct 628699 CGTCGGCGCCGCCGCGAAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGT 628758 Query 34215 AGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT 34274 | |||| || ||| |||| || | |||||| || ||||| || || |||||||||| Sbjct 628759 AATCGGCGAGGGTCCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGT 628818 Query 34275 -CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC 34333 || |||| | | |||||||| ||||| ||| | | | | || | |||| Sbjct 628819 CCGGCGGG-ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAG 628877 Query 34334 GATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | || ||||| |||||||| || ||||| || ||||||||||| Sbjct 628878 CTCTCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 628933 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| ||||| || ||||| || | || || ||||| |||||||| |||| Sbjct 623518 CCACCGCGGAGCCTGAGTACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 623577 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || || |||| |||||||||||||| ||||| || |||| |||||||| || |||| Sbjct 623578 AGGGTGCGACCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 623637 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||||| ||| | | | | |||| || | ||||| Sbjct 623638 -ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAGCTCTCGAC 623696 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || ||||| || ||||| || ||||||||||| Sbjct 623697 TTCTAGGGTTATCGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 623744 >seq168 Length=274740 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||||||||| ||||||||||||| || ||| | || Sbjct 146401 AGCACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCC 146460 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| || | | ||||||||| ||| | || ||||||||| Sbjct 146461 TCGAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 146520 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | |||| ||| || |||| |||||||| Sbjct 146521 TGGATC-TTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGATGGT 146579 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| |||||||| || || ||||| || ||||| Sbjct 146580 TTTCCCGGTGAGGGTCTTGACAAATATTTGCAT 146612 Score = 105 bits (116), Expect = 4e-18 Identities = 157/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| ||||||||||| | || ||| |||| Sbjct 146857 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCC 146916 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| ||||| ||||| || |||| ||||||||| || | | ||||||||| Sbjct 146917 TCAAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCT 146976 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTC-GA---TTCGACGTCCACCGTGA 34352 ||||| ||||| | || |||||| ||| || ||| || || | |||| Sbjct 146977 TGAATCTTA-GCTTTGACAT----TATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGA 147031 Query 34353 TGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||||||||||||||| |||||||||||| Sbjct 147032 TGGTCTTGCCGGTGAGAGTTTTCACGAAGATCTGCATC 147069 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || ||||| ||| | ||| || ||||| ||||||||||| | Sbjct 146157 TCCACCACGAAGACGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGC 146216 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || || | || ||||| || || || | || ||||||||| || Sbjct 146217 CAGGGTACGTCCATCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGG 146276 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | || | |||| ||| || Sbjct 146277 GATGCCCTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAAC 146336 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| || ||||||||||| || ||||| ||||||||| Sbjct 146337 CTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCATC 146385 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || || |||| || | ||||||||| || || Sbjct 146650 TCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAG 146709 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 ||||| | ||||||||| ||| | || ||||||||| || ||||| ||| | | Sbjct 146710 ATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC--CTGGATTTTGGCCTTGACGT 146767 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | |||| || || || | ||||||||||| |||||||| || || | Sbjct 146768 TGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTTTTCCCGGTGAGGGTCTTAA 146827 Query 34377 CAAAGATCTGCATC 34390 | ||||| |||||| Sbjct 146828 CGAAGATTTGCATC 146841 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||| ||| | || || ||||| ||||||||||| | Sbjct 145930 CCACCACGCAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGCA 145989 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || || | ||||||||| ||||| || | || ||||||||| ||| Sbjct 145990 AGGGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 146049 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||||||| || ||||| ||| | | | | || | || | |||| Sbjct 146050 ATACCCTCCTTGTC--CTGAATTTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCGA 146107 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| || ||||| | || ||||| || |||||||| Sbjct 146108 CTTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTCACGAAAATCTGCAT 146156 >seq207 Length=245090 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| ||||||||||||| || ||| |||| Sbjct 172624 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCC 172565 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || || || || || ||||||||||| || | | |||||| || Sbjct 172564 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATCC 172505 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | || ||||| || | || ||||| Sbjct 172504 TGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGTC 172445 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 172444 TTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 172412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322961771367200