Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6 122 7e-23 seq19 120 2e-22 seq168 111 1e-19 seq1067 109 4e-19 seq207 104 2e-17 >seq6 Length=1122688 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| |||||| ||||||||| |||||||||||| || || |||| || Sbjct 399132 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCG 399191 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| ||||||||||| | |||||||||||| Sbjct 399192 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCTTGG 399251 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| ||| ||||||| ||| || ||||| Sbjct 399252 ATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCCAAGGTTATGGTCTTT 399311 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || || ||||| ||||| |||||| Sbjct 399312 CCCGTTAGGGTTTTCACGAAGATCTGCATG 399341 >seq19 Length=713669 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || |||||||||||||| |||||||||||| || || |||| ||| Sbjct 623308 ACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCC 623367 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| ||||| ||||| | || ||||| ||| Sbjct 623368 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTATCCTGG 623427 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||||| ||| |||||||| Sbjct 623428 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTT 623487 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || |||||||| || ||||| Sbjct 623488 CCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || |||||||||||||| ||||||||||| || |||| |||| || Sbjct 623080 ACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCCTCA 623139 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| |||||||| || | || ||| ||||| || || | ||| ||||||||| Sbjct 623140 AGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCCTGG 623199 Query 45248 ATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 | | || |||| || | | | | |||| | ||| ||||| | ||| |||||||| Sbjct 623200 A-TCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTCTT 623258 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || || |||||||| || ||||| Sbjct 623259 GCCGGTGAGGGTTTTCACAAAAATCTGCAT 623288 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||| || || |||| | || |||| || || ||||| || Sbjct 622869 CTCCTTCTGGATATTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCGGCAAA 622928 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| ||||| || || | |||||||||||| || || ||| || Sbjct 622929 GATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 622988 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | ||||| | ||| ||||| | ||| |||||||||||||| || ||||| || Sbjct 622989 GTCGATTGTGTCCGAGCTCTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 623048 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 623049 AAAGATCTGCAT 623060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| ||| || || |||| || || || || |||||||| Sbjct 623781 CTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 623840 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| ||||| ||||| | ||||||||||| || || ||| || Sbjct 623841 GATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 623900 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||| ||||| | || || |||||||| || || || || || Sbjct 623901 GTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTGAC 623960 Query 45325 AAAGATTTGCATGTT 45339 ||||| ||||| || Sbjct 623961 GAAGATCTGCATATT 623975 >seq168 Length=274740 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| ||||||||||| || || |||| || Sbjct 146860 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCCTCA 146919 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| |||||||| |||| || ||| ||||| || || | |||||||||||| | Sbjct 146920 AGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGA 146979 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | |||| | |||||||| | ||| || |||||| Sbjct 146980 ATCTTAGCTTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTG 147039 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||| ||||| ||||| Sbjct 147040 CCGGTGAGAGTTTTCACGAAGATCTGCAT 147068 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTG----GCGATCGTC 45183 |||||||| || || ||||||||||||||||||||| | || | || ||| || Sbjct 145948 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTC-TGCAAGGGTCCTGCCATCCTC 146006 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 | || || || |||||||| ||||||| ||| ||||| || || | |||||||||||| Sbjct 146007 G---AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTGTC 146063 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | |||||| ||| || | | | ||||| | ||| || |||| || || || Sbjct 146064 CTGAATTTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCGACTTCCAAAGTGATGGT 146123 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || |||| |||||||| || || ||||| Sbjct 146124 CTTTCCGGTCAAGGTCTTCACGAAAATCTGCAT 146156 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| ||||||||||| ||| || | || Sbjct 146173 AACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCCATCC 146232 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || |||||||| || || || ||||||| ||| ||||| || || | ||||||||||| Sbjct 146233 TCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 146292 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| | || ||||||| ||| || ||| Sbjct 146293 TGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCCAAGGTGATGGTC 146352 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| || ||||| Sbjct 146353 TTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || |||||||| ||| | |||| || || || || || ||||| Sbjct 145737 CTCCTTCTGGATATTGTAGTCCGCCAGGGTCCTCCCGTCCTCGAGCTGCTTGCCAGCGAA 145796 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| ||||| ||||| | |||||||||||| ||| ||| ||| || Sbjct 145797 AATCAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATT 145856 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| | ||| ||||||| ||| || ||||| || || || ||||| || Sbjct 145857 GTCGATGGTGTCCGAGCTCTCGACCTCCAAGGTGATGGTCTTCCCGGTGAGGGTCTTAAC 145916 Query 45325 AAAGATTTGCAT 45336 || || ||||| Sbjct 145917 GAAAATCTGCAT 145928 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| ||||||||| |||||||||||| || || |||| || Sbjct 146632 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGCCCGTCCTCG 146691 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | | ||| ||||| || || | |||||||||||| Sbjct 146692 AGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 146751 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | ||| ||||| | ||| || || || Sbjct 146752 ATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTTTTC 146811 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||||||||| Sbjct 146812 CCGGTGAGGGTCTTAACGAAGATTTGCAT 146840 >seq1067 Length=57296 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| || || | | || |||| || Sbjct 36964 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAACTG 37023 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || ||||||| ||| ||||| || || | |||||||||||| |||||| Sbjct 37024 CTTCCCTGCAAAAATCAACCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATTTT 37083 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | || ||||| | ||||||||||| ||| |||||||| || || Sbjct 37084 CGCCTTCACATTGTCGACAGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCAGT 37143 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||| ||||| |||||| Sbjct 37144 CAAGGTCTTCACGAAGATCTGCATG 37168 >seq207 Length=245090 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| || || |||| ||| Sbjct 172621 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCC 172562 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || |||| ||||| ||||| || || | |||||||| ||| Sbjct 172561 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGG 172502 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||| ||||| | ||| || ||||| Sbjct 172501 ATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGTCTTC 172442 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||| || || ||||| ||||| ||||| || Sbjct 172441 CCCGTTAGGGTTTTCACGAAGATCTGCATCTT 172410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394940404662895