Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq143 251 6e-62 seq1067 116 3e-21 seq19 105 6e-18 seq420 102 7e-17 seq343 82.4 7e-11 seq168 82.4 7e-11 >seq143 Length=298601 Score = 251 bits (278), Expect = 6e-62 Identities = 578/857 (67%), Gaps = 19/857 (2%) Strand=Plus/Plus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| ||||| | || || || || ||| | |||||||| ||||| || || ||||| Sbjct 57635 CATGTTCCCGATCCAGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTT 57694 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664 |||||||| ||| || || ||||| || |||| | || | | || |||||| Sbjct 57695 TTGGACCGCCGAGGAGGTCGACCTCTCCCAGGACATCCGCCAGTTCGAAGCCCTCACCC- 57753 Query 57665 ATCTGA-GAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 | || ||||| | || || | ||||| | || || |||||||| ||||| || || Sbjct 57754 --CCGACGAGAAGCACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCAT 57811 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781 || |||||| | | || | || | || || || || |||||||| | Sbjct 57812 CGTCCTAGAGAATCTCGCCGGTGGGTTCATGAAGGAGGTCCAGGTCGCGGAGGCGCGTGC 57871 Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 ||| ||||| || || | ||||| || ||| | || || |||||||| || ||| | Sbjct 57872 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTCCT 57931 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 ||| || ||| | ||||| || |||||| | | || ||| ||| ||||| || | Sbjct 57932 CGAGACCTACATCAAGGATTCCGCCGAGAAGAGCCGCCTCTTCCGCGCCATCGACACTGT 57991 Query 57902 GCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA 57960 || ||| |||| |||||||| ||||| | || ||||| | || || | || Sbjct 57992 CCCTTGCG-TCGCGAAGAAGGCCCAGTGGGCCCTCCGCTGGATCGACGGCTCCGAGTCC- 58049 Query 57961 CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCT 58020 ||||||||| | || ||||| |||||| ||||||||| || ||||| || || |||| Sbjct 58050 --TTCGCCGAGCGCCTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCT 58107 Query 58021 T-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 | |||| || | || ||| | ||||| ||||| ||||||| || || || || |||| Sbjct 58108 TCTGCGCCA-TCTTCTGGCTAAAGAAGCGCGGGTTGATGCCGGGACTCACCTTCTCCAAC 58166 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 |||||||| ||||| |||||||| | || ||||| |||||||| ||||||| | Sbjct 58167 GAGTTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGCGTGCCTTCTGTACTCACTA 58226 Query 58140 ATTGTCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGAT 58198 | || || | || ||| ||| || || || || || ||| ||||| | ||| Sbjct 58227 CTGAGGAAGAAGCTGA-GCGAGGAGCGGGTCAAGGGGATCGTCCGCGACGCGGTGGAGAT 58285 Query 58199 CGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTT 58258 ||| | |||||||| ||| || || ||| || || | || |||||| || | Sbjct 58286 CGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGTGGGGATGAACCGGGAACT 58345 Query 58259 GATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAG 58316 |||| ||||||| || ||||| ||||| | ||| || | || | | | || Sbjct 58346 GATGAGCCAGTACATCGAATTTGTCGCCGATCGGCTTCTGGGTGCGCTAGGGTGCGGGAA 58405 Query 58317 CGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAG 58376 || ||| | | || |||||||||| ||| | ||||| ||| | |||| ||| Sbjct 58406 GGT--GTACGGAGTGCAGAACCCGTTTGATTGGATGGAGCTGATATCGTTGCAGGGGAAG 58463 Query 58377 ACAAACTTTTTCGAAAA 58393 || ||||| ||||| || Sbjct 58464 ACCAACTTCTTCGAGAA 58480 >seq1067 Length=57296 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || ||||| || || |||||| | || || || || Sbjct 37395 ATGCAGATTTTTGTCAAGACGCTTACAGGAAAGACCATCACCCTTGAGGTGGAGAGCTCA 37336 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | | ||||||| || | || || ||||| Sbjct 37335 GACACGATTGATAACGTCAAGGCAAAGATTCAAG-ACAAGGAGGGAATCCCCCCTGACCA 37277 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || |||||||| |||||| | ||||| || |||| | |||||||| Sbjct 37276 GCAGCGGCTGATTTTCGCTGGGAAACAGCTCGAAGATGGTAGGACTCTTGCGGATTATAA 37217 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || |||||||| ||||| || || || | |||||||| || Sbjct 37216 CATCCAGAAGGAATCGACCCTTCACCTTGTGCTGCGCCTGAGGGGTGG 37169 >seq19 Length=713669 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || ||||| || || || |||| || || Sbjct 628937 AAATATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATAACTCTCGAGGTCGAGAG 628878 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| | || |||||||||||| | ||||| || Sbjct 628877 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCGCCGGA 628818 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||||||| || |||||||| || ||| | |||||| ||| | |||||| Sbjct 628817 CCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGGACCCTCGCCGATTA 628758 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| || ||||| || Sbjct 628757 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTCCT 628722 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || ||||| ||| | || || || || Sbjct 623744 ATGCAGATCTTCGTCAAAACCCTAACCGGTAAGACGATAACCCTAGAAGTCGAGAGCTCT 623685 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| |||||||| | ||||| |||||| Sbjct 623684 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATCCCGCCGGACCAG 623625 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| ||||| |||||||| ||| | || | |||||| ||| Sbjct 623624 CAGAGGCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGTCGCACCCTCGCCGATTACAAC 623565 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || ||||||||||| || || | || |||| Sbjct 623564 ATCCAGAAGGAGTCGACGCTGCATCTGGTACTCAGGCTCCGCGGTGGTA 623516 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || ||||| || ||||| |||| || || Sbjct 623976 AAATATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAG 623917 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| | || |||||||| || | || || || Sbjct 623916 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGGATTCCTCCGGA 623857 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||||||| || ||||| ||||| ||| | || ||| ||| | |||||| Sbjct 623856 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCGCCGATTA 623797 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || ||||| |||||||| ||| | || | || |||| Sbjct 623796 CAACATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTCCGTGGAGGTA 623744 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| ||||||||| |||| ||||| || Sbjct 623060 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGAGCTCG 623001 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| || | || || |||||| Sbjct 623000 GACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 622941 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || || || |||||||| || Sbjct 622940 CAGCGTCTGATCTTTGCCGGGAAGCAGTTGGAGGA 622906 >seq420 Length=153407 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || || || || || || || ||| |||| ||||| Sbjct 119326 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTTGAGT 119267 Query 31248 CGTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 | ||||||| |||| | || || || ||| | ||||||||| || | ||||| Sbjct 119266 CCTCCGACACCATCGACAATGTGAAGACCAAGA-TCCAGGACAAGGAGGGAATCCCGCCG 119208 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||||| || || ||||| ||||| ||| | || ||| ||| | ||| Sbjct 119207 GACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGGACCCTCGCCGAC 119148 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || ||||| || || ||||| || | || ||||| || Sbjct 119147 TACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTCCGCCTTAGGGGAGG 119095 >seq343 Length=177656 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || || || |||||| | | || || ||||| || || ||||| Sbjct 100843 GGACAAGGAAGGAATTCCTCCGGATCAGCAGAGATTGATTTTTGCTGGGAAGCAATTGGA 100784 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | |||| | ||||| |||||||| || || || |||||||||||||| | Sbjct 100783 AGATGGGAGGACTCTTGCGGATTACAACATTCAGAAGGAGTCAACTCTTCATCTGGTTTT 100724 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 100723 GAGGCTTAGGGGAGG 100709 >seq168 Length=274740 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || || || |||||| | || || || || Sbjct 145928 ATGCAGATTTTCGTTAAGACCCTCACCGGGAAGACCATCACCTTGGAGGTCGAGAGCTCG 145869 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || ||| | ||||||||| ||| | || || ||||| Sbjct 145868 GACACCATCGACAATGTGAAGGCAAAGATTCA-GGACAAGGAGGGCATTCCTCCGGACCA 145810 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| | || ||| | ||| || || || || Sbjct 145809 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTCGAGGACGGGAGGACCCTGGCGGACTACAA 145750 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || || || || || ||| Sbjct 145749 TATCCAGAAGGAGTCTACCCTCCACCTTGTCCTT 145716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445610409620400