Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq143 131 2e-25 >seq143 Length=298601 Score = 131 bits (144), Expect = 2e-25 Identities = 382/580 (66%), Gaps = 10/580 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||||| |||||||||| || || ||||| || || |||||| Sbjct 58210 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGT 58151 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | || ||||| || ||||| || |||| ||| |||||| |||||| Sbjct 58150 CCCGGCATCAACCCGCGCTTCTTTAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAG 58091 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGTCATG 33757 || ||||| || ||| || ||||| || || | ||| | | || ||| || ||| Sbjct 58090 ATCCCTTCGAC-GCAGGCGAAGGCGATGAGGCGCTCGGCGAAGGACTCGGAGCCGTC--- 58035 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | ||||| | ||||||||| || ||||| | || || ||||| Sbjct 58034 GATCCAGCGGAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGACAGTGTCGATGGCGCG 57975 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||| | | || || ||| || | || || |||| | || || ||||| Sbjct 57974 GAAGAGGCGGCTCTTCTCGGCGGAATCCTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 57915 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||| || || ||||| || ||||| ||||| || |||||||| | ||||| | | Sbjct 57914 TTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGCGAC 57855 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | || | | || | ||| || || || || || ||| || Sbjct 57854 CTGGACCTCCTTCATGAACCCACCGGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGC 57795 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-T 34056 || || || | || || | || || | || ||||| || || || ||| || | Sbjct 57794 GAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGGGGTGAG-GGCTTCGAACT 57736 Query 34057 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 34116 ||| || | || | || || || || | |||||||| || ||||| ||||| | Sbjct 57735 GGCGGATGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAAAACGAGGCCTCGGCCTTCT 57676 Query 34117 TATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 | ||||| | |||||| || | || ||||| ||||| || Sbjct 57675 TGTACATCTCCCAGATCTCCGGGTACTGGATCGGGAACAT 57636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629597203203600