Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq143 96.9 5e-15 >seq143 Length=298601 Score = 96.9 bits (106), Expect = 5e-15 Identities = 230/342 (67%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||||||||| | |||||||||| || || |||||||| || |||||| Sbjct 58210 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGT 58151 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||| | || ||||| || ||||| || |||| |||| || ||| || ||||| Sbjct 58150 CCCGGCATCAACCCGCGCTTCTTTAGCCAGAAGATGG-CGCAGAAGCTTCCGGAGAAGAA 58092 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCACTGTCATG 36333 || ||||| || || ||||| || || | ||| | | || ||| | ||| Sbjct 58091 GATCCCTTCGACGCAGGCGAAGGCGATGAGGCGCTCGGCGAAGGACTCGGAGCCGTC--- 58035 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | ||||| | ||||||||| || ||||| | || || || || Sbjct 58034 GATCCAGCGGAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGACAGTGTCGATGGCGCG 57975 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 ||||| | | || || ||| || | || || || | | || || ||||| Sbjct 57974 GAAGAGGCGGCTCTTCTCGGCGGAATCCTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 57915 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 ||| || || ||||| || ||||| || || || |||||||| Sbjct 57914 TTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 57873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657942480655800