Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq19 102 8e-17 seq1067 86.0 6e-12 >seq19 Length=713669 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| |||||| Sbjct 628706 GCCGCCGCGAAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGC 628765 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||||||||| || ||||| |||||||||| ||||| || || || Sbjct 628766 GAGGGTCCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 628825 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| | ||| || Sbjct 628826 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 628885 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | ||||||||||| | ||||| ||||| || |||||| Sbjct 628886 CTCGAGAGTTATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATA 628934 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| |||||| | || | ||| |||||||| || || Sbjct 623776 GTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCG 623835 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| ||||| || ||||| || || || ||||| ||| || || Sbjct 623836 GCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCTTGGATCTTGGCCTTG 623895 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||| | || | ||||||||||| | ||| Sbjct 623896 ACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTT 623955 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 623956 TTGACGAAGATCTGCATA 623973 >seq1067 Length=57296 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||||| || || || || || ||||||||||| | || || Sbjct 37181 CGCAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCCGCAAGAGTCCTACCA 37240 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 |||||||||||||| ||||| | ||||| || ||||| || || || || || || ||| Sbjct 37241 TCTTCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGGGGATTCCCTCCTTG 37300 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| || | | || | ||||| | | ||||||||||| ||| | Sbjct 37301 TC-TTGAATCTTTGCCTTGACGTTATCAATCGTGTCTGAGCTCTCCACCTCAAGGGTGAT 37359 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||| || || || || ||||| Sbjct 37360 GGTCTTTCCTGTAAGCGTCTTGACAAAAATCTGCAT 37395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495890408604000