Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq19 102 6e-17 >seq19 Length=713669 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||||| ||| | |||||||||||| || | ||||| |||| Sbjct 623290 CCTCCACGGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 623349 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||| || || ||||| || |||| ||||| || || | || Sbjct 623350 AGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGA 623409 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | ||||| || | | |||||| ||| ||| || Sbjct 623410 ATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCG-GAGCTCTCCAC 623468 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||||||||| ||||||||||| || ||||| Sbjct 623469 CTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| ||||| |||||||||||| || | ||||| || | Sbjct 623062 CCACCACGGAGACGGAGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCG 623121 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | ||||| ||||| || || | | ||| || || | || Sbjct 623122 AGGGTGCGACCGTCCTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGA 623181 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||| || || |||| |||| || || | | |||||| ||| |||||| Sbjct 623182 ATACCTTCCTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCG-GAGCTCTCGAC 623240 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || |||||||||||||| ||||| Sbjct 623241 CTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 623288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381239480863710