Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq143 113 6e-20 >seq143 Length=298601 Score = 113 bits (124), Expect = 6e-20 Identities = 378/580 (65%), Gaps = 10/580 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||||||||||| ||||| |||| || || |||||||| || |||||| Sbjct 58210 CACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTGAGT 58151 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| | || ||||| || ||||| || || | |||| || ||| || ||||| Sbjct 58150 CCCGGCATCAACCCGCGCTTCTTTAGCCAGAAGAT-GGCGCAGAAGCTTCCGGAGAAGAA 58092 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCACTGTCATG 42240 ||| ||||| || || ||||| || || | ||| | | || ||| | ||| Sbjct 58091 GATCCCTTCGACGCAGGCGAAGGCGATGAGGCGCTCGGCGAAGGACTCGGAGCCGTC--- 58035 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | ||||| | ||||||||| || ||||| | || || ||||| Sbjct 58034 GATCCAGCGGAGGGCCCACTGGGCCTTCTTCGCGACGCAAGGGACAGTGTCGATGGCGCG 57975 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 ||||| | | || || ||| || | || || |||| | || || ||||| Sbjct 57974 GAAGAGGCGGCTCTTCTCGGCGGAATCCTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 57915 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 ||| || || ||||| || ||||| ||||| || |||||||| | ||||| | || Sbjct 57914 TTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGCGAC 57855 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 ||| || || | || | | || | ||| || || || ||||| ||| || Sbjct 57854 CTGGACCTCCTTCATGAACCCACCGGCGAGATTCTCTAGGACGATGCCGTCGGAGGCGGC 57795 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAA-T 42539 || || || | || || | || || | || |||| ||| | | | ||| || | Sbjct 57794 GAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGT-CGGGGGTGAGGGCTTCGAACT 57736 Query 42540 CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 ||| || | || | || || || || | |||||||| || || || ||||| | Sbjct 57735 GGCGGATGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAAAACGAGGCCTCGGCCTTCT 57676 Query 42600 TATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 | ||||| | |||||| || | || || || ||||| || Sbjct 57675 TGTACATCTCCCAGATCTCCGGGTACTGGATCGGGAACAT 57636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670904343226200