Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq143 158 2e-33 >seq143 Length=298601 Score = 158 bits (174), Expect = 2e-33 Identities = 585/890 (66%), Gaps = 45/890 (5%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | || || ||||| |||||||| ||||| ||||||| |||| Sbjct 57637 TGTTCCCGATCCAGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTTT 57696 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || ||| ||||| | | | | || | | | || Sbjct 57697 GGACCGCCGAGGAGGTCGACCTCTCCCAGGACATCCGCCAGTTCGAAGCCC---TCACCC 57753 Query 125116 AAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | || ||||| || || | ||| | | |||||||| |||| |||||| || Sbjct 57754 ---CCGA-CGAGAAGCACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGC 57809 Query 125172 ATCGTCAACGACAATCT----GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAG 125225 |||||| || ||||| | || | ||| | ||| | ||| || | ||| Sbjct 57810 ATCGTCCTAGAGAATCTCGCCGGTG----GGTTCATGAAGGAGGT--CCAGGTCGCGGAG 57863 Query 125226 GTGTCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTC 125284 | | ||||| || ||||| ||||| ||| || |||||| | ||||| ||||||||| Sbjct 57864 GCG-CGTGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAAATGTACAG 57922 Query 125285 TACACTGATTGACATGTACATTCGCGAT-CCGCAACGTAAACACATGC-TCTTTAACGCA 125342 || | || | ||||| ||| |||| || || | || |||| ||| Sbjct 57923 CCTCCTCCTCGAGACCTACATCAAGGATTCCGC--CGAGAAGAGCCGCCTCTTCCGCGCC 57980 Query 125343 ATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGAC 125402 |||||||| || || | | || ||||| || |||| | || |||||||| | | Sbjct 57981 ATCGACACTGTCCCTTGCGTCGCGAAGAAGGCCCAGTGGGCCCTCCGCTGGATCGACGGC 58040 Query 125403 GACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTT 125462 | |||| | |||||| | || | || |||||| ||| || || |||||||| Sbjct 58041 TCCGAGTCCTT---CGCCGAGCGCCTCATCGCCTTCGCCTGCGTCGAAGGGATCTTCTTC 58097 Query 125463 TCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || || || || |||| ||||||| ||||| ||||||||||| | ||||| ||||| || Sbjct 58098 TCCGGAAGCTTCTGCG-CCATCTTCTGGCTAAAGAAGCGCGGGTTGATGCCGGGACTCAC 58156 Query 125522 GCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 | |||||||| || || |||||||||||| | ||||| || || || || || Sbjct 58157 CTTCTCCAACGAGTTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGCGTGCCTTCT 58216 Query 125582 GTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGT 125641 | | | | |||| ||| | || | || | ||||| || ||||| || || Sbjct 58217 G-TACTC-ACTA-CTGAG----GA-AGAAGCT-GAGCGAGGAGCGGGTCAAGGGGATCGT 58267 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGAT 125701 ||| || ||| ||| || |||||| | ||| | || ||| | || | Sbjct 58268 CCGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGT 58327 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 || |||||| | | || ||| || ||||||| || ||||| || ||||| || ||| Sbjct 58328 GGGGATGAACCGGGAACTGATGAGCCAGTACATCGAATTTGTCGCCGATCGGCTTCTGGG 58387 Query 125762 CGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAGCA 125820 | | | || | ||| | ||| | |||| || ||||||| || || | | | Sbjct 58388 TGCGCTAGGGTGCGGGAAGGTGTACGGAGTGCAGAACCCGTTTGATTGGATGGAGCTG-A 58446 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 |||| | |||| ||||||||||| |||||||||| |||| | |||||| Sbjct 58447 TATCGTTGCAGGGGAAGACCAACTTCTTCGAGAAGAGGGTCGGTGAGTAC 58496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740799875596200