Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27]
27,995 sequences; 247,090,738 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq168 93.3 3e-14
seq19 86.0 5e-12
>seq168
Length=274740
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||||||||| ||||| || |||||||| ||| || ||| | || ||
Sbjct 146404 ACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCG 146463
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || || ||| | ||||| | || ||||| || || || || |||||
Sbjct 146464 AGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 146523
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| || ||| | || ||||| ||| ||||||| || ||||| ||||||||
Sbjct 146524 ATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGATGGTTTTC 146583
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || ||||| ||||||||
Sbjct 146584 CCGGTGAGGGTCTTGACAAATATTTGCAT 146612
>seq19
Length=713669
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| || ||||| || || || |||||||||||| || | | ||||||| | ||
Sbjct 628731 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCTTCGAGCTGC 628790
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| |||||| | |||| ||| || ||||| || |||||||| ||||| || |||
Sbjct 628791 TTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTG 628850
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| || | || ||||| ||| | || || || | || ||||| || || ||
Sbjct 628851 GCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGTT 628910
Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367
|| ||||| || || || |||||||||
Sbjct 628911 AGGGTTTTGACGAAGATCTGCATATTT 628937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362055628418295
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |