Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1067 136 9e-27 seq168 131 4e-25 seq19 118 2e-21 seq343 102 2e-16 seq136 86.0 1e-11 >seq1067 Length=57296 Score = 136 bits (150), Expect = 9e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||| ||||| || ||||| || Sbjct 37166 ATGCCACCCCTCAGGCGCAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCC 37225 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| ||||| ||||| || ||||| ||||| ||||| |||| ||| || ||||| Sbjct 37226 GCAAGAGTCCTACCATCTTCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGG 37285 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| || || || ||||||||||| || || || || | || || || | || Sbjct 37286 GGGATTCCCTCCTTGTCTTGAATCTTTGCCTTGACGTTATCAATCGTGTC-TGAGCTCTC 37344 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || ||||| || ||||| || || ||||| ||||||||| Sbjct 37345 CACCTCAAGGGTGATGGTCTTTCCTGTAAGCGTCTTGACAAAAATCTGCATT 37396 >seq168 Length=274740 Score = 131 bits (144), Expect = 4e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||| ||||| ||||| | || || || ||||| Sbjct 145716 AAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTGTAGTCCGCCAGGGTCCTCCCGTC 145775 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| ||||| |||||||| || || ||||| || || || || || Sbjct 145776 CTCGAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 145835 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 |||||||||||| || ||||| || | ||| || | || | || ||||| | || || | Sbjct 145836 CTGAATCTTTGCCTTCACATTGTCGATGGTGTC-CGAGCTCTCGACCTCCAAGGTGATGG 145894 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 145895 TCTTCCCGGTGAGGGTCTTAACGAAAATCTGCAT 145928 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||||||||| || ||||| | || |||| || || || || || || || Sbjct 146416 GTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGCTTACCG 146475 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | ||||| || || || || || || || || ||||| ||||| ||||| Sbjct 146476 GCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTG 146535 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| ||||||||| | || || || || || || || || Sbjct 146536 ACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGATGGTTTTCCCGGTGAGGGTC 146595 Query 104543 TTTACAAATATCTGCATT 104560 || |||||||| |||||| Sbjct 146596 TTGACAAATATTTGCATT 146613 >seq19 Length=713669 Score = 118 bits (130), Expect = 2e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| | || |||| ||||| || || || ||||| || || Sbjct 623326 TCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCGAAG 623385 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || ||||| || ||||| |||||||| ||||| || || || || Sbjct 623386 ATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTG 623445 Query 104489 TCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||| ||| || | || ||||| || || || ||||| || || || ||||| || Sbjct 623446 TCGATGGTGTCGG-AGCTCTCCACCTCCAGGGTGATCGTCTTTCCGGTTAGGGTTTTCAC 623504 Query 104548 AAATATCTGCAT 104559 |||||||||||| Sbjct 623505 AAATATCTGCAT 623516 >seq343 Length=177656 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| | || ||||| | || || || |||||||| || || || | Sbjct 100707 TTCCTCCCCTAAGCCTCAAAACCAGATGAAGAGTTGACTCCTTCTGAATGTTGTAATCCG 100766 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||||| || || ||||| | ||| || ||||||||||| | ||||| ||||| |||| Sbjct 100767 CAAGAGTCCTCCCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGAG 100826 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | |||||||| || ||||||| Sbjct 100827 GAATTCCTTCCTTGTCCTGAA 100847 >seq136 Length=310922 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 104452 TATT-CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 |||| ||||| || ||||||||||| || || ||||| || | ||| ||||| | || | Sbjct 6590 TATTACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGA 6531 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| || || || ||||| || || || ||||| ||||| |||||||| || Sbjct 6530 CCTCAAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCATCTT 6479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150985409585460