Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq19 111 1e-19 seq207 93.3 4e-14 seq168 93.3 4e-14 >seq19 Length=713669 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| ||||||||||| || |||||||| || || | ||| ||||||| Sbjct 623307 CACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTC 623366 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | ||||||||| ||| || | | |||||| ||| Sbjct 623367 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTATCCTG 623426 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || ||||| |||| |||| ||| | || || || Sbjct 623427 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTC 623484 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || ||||||||||| |||||||| Sbjct 623485 TTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||||||||||| || |||||||| || || | || ||||||| Sbjct 623079 CACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGACCGTCCTC 623138 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||| || ||| || | || | | |||||| ||| || | || |||||||||| Sbjct 623139 AAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTGTCCTG 623198 Query 48637 AATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || |||| | | | ||||| |||| ||| ||| | || || || | Sbjct 623199 GATCTT-GGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTCT 623257 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | |||||||| ||||||||||||||||||||| Sbjct 623258 TGCCGGTGAGGGTTTTCACAAAAATCTGCATC 623289 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||||||||| || | || |||| || |||||| Sbjct 628731 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCTTCGAGCTGC 628790 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | ||||||||| ||| ||| | | |||||||||| || || Sbjct 628791 TTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTG 628850 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| |||| ||| ||||| |||||||| || |||| Sbjct 628851 GCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGG 628908 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || || |||||||| Sbjct 628909 TTAGGGTTTTGACGAAGATCTGCAT 628933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| || | || ||||||| |||||||| ||| || | Sbjct 623781 CTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 623840 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||| ||| || | | |||||||| || || ||||| | Sbjct 623841 GATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 623900 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| ||| ||||| || ||||| || |||||||| ||||| Sbjct 623901 GTCG--ATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTG 623958 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 623959 ACGAAGATCTGCAT 623972 >seq207 Length=245090 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | ||| |||||||||||||| Sbjct 172615 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCCAGCTGC 172556 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || | ||||||||| ||| ||| | | ||||| ||| || ||| Sbjct 172555 TTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTC 172496 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | ||||| ||| | |||||||| || || || Sbjct 172495 GCCTTCACATTGTCGATGGTGTCCGAGGACTCGACCTCTAGGGTTATGGTCTTCCCCGTT 172436 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| || ||||||||| Sbjct 172435 AGGGTTTTCACGAAGATCTGCATC 172412 >seq168 Length=274740 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| |||||| || |||||||| ||||| | ||| ||||||| Sbjct 146859 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCGTCCTC 146918 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||| || ||| || | || | | |||||| ||| || | || |||||||| Sbjct 146919 AAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTG 146978 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || |||| | | ||||| || | ||| ||||| || ||||| || Sbjct 146979 AATCTTAGCTTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTT 147038 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||||||||||||||| || ||||||||| Sbjct 147039 GCCGGTGAGAGTTTTCACGAAGATCTGCATC 147069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421107473697995