Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq20 114 7e-21 seq319 111 8e-20 seq45 111 8e-20 seq36 111 8e-20 seq431 107 1e-18 seq355 107 1e-18 seq32 105 3e-18 seq764 104 1e-17 seq182 95.1 6e-15 >seq20 Length=686470 Score = 114 bits (126), Expect = 7e-21 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 76283 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 76342 Query 11514 ACTGAGCTAATGGGCCGTCGAC 11535 ||||||||||| |||| ||||| Sbjct 76343 ACTGAGCTAATAGGCCTTCGAC 76364 >seq319 Length=186083 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| ||| |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 9206 TAAAAAAAAAAAGTTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 9265 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 9266 GACGCTCTAACCAACTGAGCTAATAGGCC 9294 >seq45 Length=532236 Score = 111 bits (122), Expect = 8e-20 Identities = 89/106 (84%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 11429 AAATATAGA---ATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||||||| | || ||||||| ||||| ||||||||| | | |||||||| ||||| Sbjct 249744 AAATATATATTCATAAATAAAAGTGTCAAAATGGCCCATGCAGGTCTCGAACCTGCGACC 249685 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||||| ||||||| ||||||| ||||| Sbjct 249684 TTCGCGTTATTAGCACGACGCTCTAACCAACTCAGCTAATAGGCCG 249639 >seq36 Length=579258 Score = 111 bits (122), Expect = 8e-20 Identities = 83/98 (85%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 11436 GAATTAATAAAAAATC----AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||||||| |||||| ||| ||||||||| | | |||||||| |||||||||||| Sbjct 48974 GAATTAAAAAAAAAGGGCCAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGT 49033 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| ||||||||||||||| |||| Sbjct 49034 TATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 49071 >seq431 Length=150127 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 56569 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 56510 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 56509 CAACTGAGCTAATAGGCC 56492 >seq355 Length=172889 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 125412 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 125353 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 125352 TGAGCTAATAGGCCGT 125337 >seq32 Length=613575 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 100444 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 100385 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 100384 TGAGCTAATAGGCCG 100370 >seq764 Length=85687 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 34399 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 34340 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 34339 TGAGCTAATAGGCC 34326 >seq182 Length=265685 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| |||| | | ||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 253581 TGGCACATGCAGGTCTCGAACCTTCGACCTTCGCGTTATTAGCACGACACTCTAACCAAC 253640 Query 11516 TGAGCTAATGGGCC 11529 |||| |||| |||| Sbjct 253641 TGAGATAATAGGCC 253654 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261401982062620