Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ficus_20carica_20[genbank_20GCA_5F002002945.1_202017-01-27] 27,995 sequences; 247,090,738 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq168 113 4e-20 seq1067 107 2e-18 seq19 104 2e-17 seq207 98.7 9e-16 seq136 82.4 7e-11 >seq6 Length=1122688 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||| | || | |||||||| | || || ||||| || | ||| || ||| Sbjct 399112 CTCCTCCTCTGAGGCGGAGAACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGG 399171 Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || | ||||| ||||| |||||| | ||||| | | ||||| || |||| Sbjct 399172 CGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGAG 399231 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||| || ||||| | || || |||||||| | ||| |||||| | | |||| Sbjct 399232 GGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGA 399291 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || | || ||||| ||||| || || |||||||| |||||||||||| Sbjct 399292 CCTCCAAGGTTATGGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCATG 399341 >seq168 Length=274740 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | ||| || ||||| || | ||| || || || || | Sbjct 146170 CGCAACACCAAGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGTCCA 146229 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| || ||||||| || || ||||| ||||| || || || || ||| Sbjct 146230 TCCTCGAGTTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTG 146289 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || |||||||| | | | ||||| | | || || || | |||||| Sbjct 146290 TCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCCAAGGTGATG 146349 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || ||||| || ||||| |||||||| Sbjct 146350 GTCTTTCCGGTGAGAGTCTTAACAAAAATCTGCAT 146384 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAA--TC 94854 ||||||||| | || || ||||| || | ||| || || || || ||| | || Sbjct 146859 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG---AGGGTTCGGCCGTC 146915 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 ||| |||||||| ||| | ||||| | || ||||| || || || ||||| || ||||| Sbjct 146916 CTCAAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTC 146975 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | ||| || || ||||| ||| ||||||| | || || || | |||||||| Sbjct 146976 TTGAATCTTAGCTTTGACATTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGT 147035 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||||||||| ||||||||||| Sbjct 147036 CTTGCCGGTGAGAGTTTTCACGAAGATCTGCAT 147068 Score = 98.7 bits (108), Expect = 9e-16 Identities = 169/242 (70%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| | | || | |||||| || | || || ||||| || | Sbjct 146601 AAATATTTGCATTCCTCCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGAT 146660 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || ||| | | ||| | ||||| ||||| || ||| ||||||| | ||| Sbjct 146661 GTTGTAGTCGGCGA--GGGTTCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTC 146718 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| ||||| || || || || ||||| | ||||| ||||||||| | | | ||| Sbjct 146719 TGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATGGTG 146778 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | ||||||||||| || || || || || || ||||| ||| Sbjct 146779 TCGGAGCTCTCAACCTCGAGGGTGATGGTTTTCCCGGTGAGGGTCTTAACGAAGATTTGC 146838 Query 95006 AT 95007 || Sbjct 146839 AT 146840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || ||||| || || | ||| || ||| | || | |||||| Sbjct 146403 CACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTC 146462 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| ||||| ||||| ||||| || || || || ||||| | Sbjct 146463 GAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTG 146522 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || || ||||| | | | ||||| | | || || || | ||||||||||| Sbjct 146523 GATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCTACCTCCAAGGTGATGGTTTT 146582 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| || ||||| Sbjct 146583 CCCGGTGAGGGTCTTGACAAATATTTGCAT 146612 >seq1067 Length=57296 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| ||||| || ||| | |||||||| ||| || || Sbjct 36971 GTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAACTGCTTCCCT 37030 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || || || ||||| ||||| || || || || ||||| | |||||| ||||| Sbjct 37031 GCAAAAATCAACCTCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATTTTCGCCTTC 37090 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | |||||||||| | | || || || | ||||| || || ||||| | || Sbjct 37091 ACATTGTCGACAGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCAGTCAAGGTC 37150 Query 94991 TTCACAAAGATCTGCATGC 95009 ||||| ||||||||||||| Sbjct 37151 TTCACGAAGATCTGCATGC 37169 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | ||| | || |||||||| || | ||||||||| Sbjct 37169 CCACCCCTCAGGCGCAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCCGCA 37228 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || |||||||| || | || || | | ||||| || || || Sbjct 37229 AGAGTCCTACCATCTTCGAGCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGGGG 37288 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||| |||||||||||| | | ||||| | | || || Sbjct 37289 ATTCCCTCCTTGTCTTGAATCTTTGCCTTGACGTTATCAATCGTGTCTGAGCTCTCCACC 37348 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| ||||| ||||| || || ||||| |||||||| Sbjct 37349 TCAAGGGTGATGGTCTTTCCTGTAAGCGTCTTGACAAAAATCTGCAT 37395 >seq19 Length=713669 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| |||||||| ||| | ||||| | || ||||| || || ||||||||||| ||| Sbjct 623134 TCCTCAAGCTGTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGAATACCTTCCTTG 623193 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || || ||| | ||| ||||| | | ||||| |||| ||||| Sbjct 623194 TCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATC 623253 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||||||||| |||||||| Sbjct 623254 GTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 623288 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| |||||| | ||||| | | ||||| || |||||||| ||||| || Sbjct 623362 TCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTA 623421 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | ||| ||||| | | || || || | ||||| Sbjct 623422 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATC 623481 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || ||||||||||| |||||||| Sbjct 623482 GTCTTTCCGGTTAGGGTTTTCACAAATATCTGCAT 623516 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | |||||| ||||| || | ||| |||||| | || | ||||| Sbjct 623764 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCCTCG 623823 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| | ||||| | | ||||| || |||||||| || || ||||| | Sbjct 623824 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCTTGG 623883 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | ||| ||||| | | ||||| || | |||||||| || Sbjct 623884 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTG 623943 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||||||||| Sbjct 623944 CCGGTGAGGGTTTTGACGAAGATCTGCAT 623972 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| |||| || || ||||| || | ||| |||||| | ||| |||||| Sbjct 623536 ACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCC 623595 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || ||| | ||||| | || ||||| || || || || ||||| || || | Sbjct 623596 AACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATTCCTTCCTTATCCTGG 623655 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | ||| ||||||| | ||||| || | || || || || Sbjct 623656 ATCTTGGCCTTGACGTTGTCGATCGTGTCAGAGCTCTCGACTTCTAGGGTTATCGTCTTA 623715 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||||||||| Sbjct 623716 CCGGTTAGGGTTTTGACGAAGATCTGCAT 623744 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | ||| || ||||| || | ||| |||||| | || | || || Sbjct 628725 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCGGCCGTCTTCG 628784 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| ||||| | ||||| | | ||||| || || || || ||||| ||||| | Sbjct 628785 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGG 628844 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | ||| ||||| | | ||||| || | || ||||| || Sbjct 628845 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTG 628904 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||||||||| Sbjct 628905 CCGGTTAGGGTTTTGACGAAGATCTGCAT 628933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| ||| || ||| ||||||| | | ||||| || || ||||| || || || Sbjct 622905 ATCCTCCAACTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTT 622964 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| ||| | ||| ||||| | | || || || | ||||| Sbjct 622965 GTCCTGGATCTTCGCCTTCACGTTGTCGATTGTGTCCGAGCTCTCAACCTCGAGGGTGAT 623024 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || |||||||||||||| Sbjct 623025 CGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 623060 >seq207 Length=245090 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 ||||||| || | || | |||| ||| | ||| || ||||| || | ||| || ||| Sbjct 172641 CTCCTCCCCTGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 172582 Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || | ||||||||||| |||||| ||||||| | | ||||| || || | Sbjct 172581 CGAGGGTTCGGCCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGCG 172522 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || || || | || || ||||| || | ||| ||||| | | |||| Sbjct 172521 GAATCCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCGA 172462 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | || ||||| || || || || |||||||| ||||||||||| Sbjct 172461 CCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 172413 >seq136 Length=310922 Score = 82.4 bits (90), Expect = 7e-11 Identities = 85/108 (79%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 94902 TACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGAC 94959 ||||||| ||||| | ||| || |||||||| | ||| ||||| || ||| ||||| Sbjct 6587 TACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTC-GC-TGGACTCGAC 6530 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || || |||||||||||||||||||| Sbjct 6529 CTCAAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 6482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448134326098200